Gene Slin_4136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_4136 
Symbol 
ID8727895 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4984373 
End bp4985209 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content46% 
IMG OID 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003388922 
Protein GI284038992 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.322145 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.588482 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCT ATATTCTCCA TACTCCCTTT AACATCTATC ACTTTGAAGC GACGACCTGG 
ATGCACGCCG TCCATAAGCA TACCTACTTC GAGATTATTT TTATCCTAAA GGGGCATGGC
ATTCATAATA TCAACGGCAA TACGTTCGGC TACAGCGAGG GCGATGTGTT TCTGTTAGGG
CCGGAGGATT ACCATGACTT TACTATTCAG GAGTCGACCG AGTTCTGCTT TATTCGCTTC
CATGAATCGC TCCATGAGCA TTCGGCAGGG GATAAGGACA CCCCCTGGCA GCCAATCATA
AAAACCTTGC TGACAACCTC TTCCCAGAGC CGTGGTACTA TCGTCGAGGA TAAACAGGAG
AAGCAAAAAC TTCACTACCT GCTGACAGTG CTGGAAGAAG AATATAAACG GGATCAGTCG
CCCTATTTTG CCATCATTCG GGACAGCCTG TTACGGAGTA TGCTCATGAT TCTGGCTCGA
AATCTGTTCA GTCATTCGCT GGCCAATTCT CAGACGACCG ATTCGGTGGA AGCGATCCTG
ATGTACATTC GGCAACACAT CTATCAGCCC GGAAAGCTCA CGATTGATCA TTTAGCGGAC
GTATTCCATT ATGCGCCCGC TTATATTAGT CTATTTTTCA AGAAGCAGAC GGGCGAATCA
CTGAAACAGT ACATCATCAA GTATAAAATC AAACTTATTG AAGCACGTTT ACTGTATAGT
TCGTTGAATC TCGCCCAAAT CGCGGATGAA TTTGGCTACA CTGATGAAAG TCACCTGTGT
AAGCAGTTCA GAAAGTACAC CGGTAGTACA CCCAGCGATT TCCGAAAAAG GGGCTGA
 
Protein sequence
MKRYILHTPF NIYHFEATTW MHAVHKHTYF EIIFILKGHG IHNINGNTFG YSEGDVFLLG 
PEDYHDFTIQ ESTEFCFIRF HESLHEHSAG DKDTPWQPII KTLLTTSSQS RGTIVEDKQE
KQKLHYLLTV LEEEYKRDQS PYFAIIRDSL LRSMLMILAR NLFSHSLANS QTTDSVEAIL
MYIRQHIYQP GKLTIDHLAD VFHYAPAYIS LFFKKQTGES LKQYIIKYKI KLIEARLLYS
SLNLAQIADE FGYTDESHLC KQFRKYTGST PSDFRKRG