| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3978 |
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| Symbol | |
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| ID | 8727736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | + |
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| Start bp | 4778305 |
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| End bp | 4781484 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003388767 |
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| Protein GI | 284038837 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000935862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAAT ACTTACTTAG TTGTTTTATG CTGGTTATGA TCGCGACGGG ACCGCTCTGG
GCGCAAACCC GACAATTGAC GGGTGTGCTA CGCGACGAGC AGGGCCAGAC CATATCCGGC
GCAAACGTGG TCGTTAAAGG GACTACGCGC GGTACTACAA CGGATGCCGC TGGTGAATTT
CGCCTGTCAA TCCCTGCCGA AAACACGATC CTGACAATTT CATCAGTCGG GTATACGGCA
AAGGACGTAC CTGTATCATC GAGTCAGACA CAACTCAGCG TAACGCTGGC GACCGATGAC
CGGCAACTGG GCGAAGTGGT TGTTACCGCT CTGGGTATCA AGCGCGAAGC GAAAGCTCTC
AGCTACGCTA CCCAGATGAT TAAACCCGCC CAGATCAACG AAGTACGCGA CGGTAACGTG
CTGAACACCT TACAGGGCAA AATTGCCGGT GCCTACATAA CCCAGGGTTC CGGCGGACCG
GGCACGGGAT CACGAATTGT GCTGCGGGGA AACCGCTCCA TTCAGGGAAC GAATAATGCC
CTGATGGTGG TCGACGGCGT TCCAATCAAC AACAGCACCT TTGGGCAGGC CACCAGCGAC
TTTGGCAGTG TGGCCAACTC AGATGGAGCC TCGAACATCA ACCCCGACGA CATCGAGAAT
GTGACCGTAT TACGGGGTGC GTCGGCGGCT GCCCTCTACG GCAGTCAGGC TGCCAACGGG
GTAATCCTGA TCACAACGAA ACGCGGAAAG TCGGGCCGGG TATCGGTCGA TATAAACTCG
GGCGTTTCAA TCGATAAACC CTTTGCGCTG CCAATGGTAC AAAACCAGTT TGGACAGGGC
GTTGGCGGAA AGCTGGACCC TGCCGTTGGG GCCAGCTGGG GCGCCCCCAT GACGGGACAG
TCGTACACAA ACTACCTCGG CAATCCTGAT ACGTACTCAG CACAGCCCAA CAACATTCGT
GATTTTTTCC GCACGGCGGT CAGTTTAAAT AACTCCATTG GCATTACGGG AGGCTCAGAG
CGGTCGCAGA CGTATCTGTC GTACACCAAT AACTCATTGC AGGGAACAGT GCCGGGCAAT
GACCTGACCC GTCACACCAT CAACCTGCGG TTGTCGAACC AGATCAGCTC GAAGCTATCG
ACCGATGCCA AGGTAACGTA CATCAATCAG TCTGTAGTGA ACAAGCCCCG GACGGGTGAG
GAAAACGCGC CGGTCATTGA CCTCTACCAG ATTCCCCGTA ACGTAAGCCT GACCACGGCA
CAAAACTACG CAGCGCCCAA CTCGTTCGGT CTGCCTACGC CAACGGCCTG GCCGTCGACG
CTGTCGTCGA TCTACCAGAA TCCCTACTGG ATGACCAATC AGACGGCCAT TAACCAGTAC
CGGGACCGCA TCATCGGCTT CGTGCTGGCG AAGTACCAGT TAACTGATTT CCTGAGCATT
CAGGGCCGGG CCAACCTCGA TAAGTATTTC GACAAAAATG AAGAAAACTA TAGCCAGGGC
ACAATTCTAT GGGCCAACCA GGCGGGTGGT AAATTCTCCC GAAACAACAT CGTAAATACC
CAAAGCTGGT ATGACCTGTT GATTGAAGGA CGGAATAAAA TCGGGACTGA CCTTACGCTC
GACTATCAGG CGGGGGCCAT TATTCAGGAT ACCCGCTACC AATCGACCAA CTCCCTGGCC
GACGGTCTCA ATGTACCGAA CCGGTTTAAC CTGAACTTTG GTACGAACCA GACACTGGGC
GATGATTTCT CGCGGATTCA GACCCAATCG CTGTTCGGGC AGGCATCGCT GGCATGGCGG
GACGCTATTT TTATCAATGC CAGTTTGCGT AATGACTGGT CATCGACCTT GCCAAAGCCT
TATTCGTTCC AGTATCCATC CGTCGGCGCA TCGGTGGTTT TGTCTGATCT GCTGAAACTT
TCGGGGCCGC TGTCATTCCT GAAAATTAAT GGATCGTTCG CGCAGGTGGG TAACGGAGCC
GATCCGTATC TGTTGCAAAC CAATTACTCG TACAGCCAGG GTGCCGGTTC CGGATTCATT
AGCCGGGATG GGACACAGGC CATTGGTAAC CTGAAGCCAG AGATCACCAA AAGTCTGGAA
CTTGGCGTCG ACGCCCGTTT TCTCAGCAAC CGTATTGGTG CAACGATTAC GGCCTACAAA
ACCAATTCGA TCAACCAGTT ATTGAAACTG GGACTGGCAC CCGCTTCGGG ATTCAGTGAC
CAGTACATCA ACGCGGGCGA TATCCGCAAC ATGGGTCTTG AGGTAGTAAT CAATGGAACA
GCGATCAAAA CCGACCGGTT GACCTGGGAT CTGACGCTGA ACATGGGCCT GAACCGGAAT
AAAATCGTTA GCCTGTCGCC CGATATTAAA ACGGCGTTCC TGTCGGGCGG TTATGGCCGG
TCAGCATCGC CGATTGTACA GGAAGGAGGC TCTTACGGTG ATATCGTATC GTACCGCTGG
GCGAAAAATG CCAACGGCCA ATACCTGATT GGTTCGCAAA CACCCAGCGG AACGGTGTCC
GAAGCATCGG TTGTATCGAC TGGCTTGCCC GTGGCTACCA AAGAGCAGGA ATACATCGGC
AACTTCAACC CCAAAATGCT CCTGGGATTC ACCAACACAT TTACGTTCAA AGGCTTTTCG
CTCCGCTTTC TGGTCGACGC CCGTTTAGGT GGCATAGCCG TATCGGGTAC TGAAATGAAC
CTGGCGTTCA GCGGCATTCC GGAAGTAACG GCGCTGAATC GGGGTGGTGG CTGGGTATTG
CCGGGCGTTA CGGCTGGCGT TGCCGGAGCC GATGGAACAA CCTTGATCGG AGCCGGCAAG
ACGAACGCAC AGGCCATTAC GGCCGAACAG TTCTGGCAAA CGGTATCGGG TAAACGCTAC
GGCTGGGGTG AGTTCTTCGC GTACGATGCG ACCAACGTGC GCCTTCGGGA AATTTCGATC
GGTTACGGCA TTCCGGTACC GTCGAATTTC TTTATCAAGT CGGCTCGCCT GTCGTTCGTA
GCCCGCAACC TGTTCTGGAT TTACCGGGGT AGTTCGCTGC TGGACATTCC CGGTATTGGC
AAGCGGAAGA TGTGGTTCGA CCCCGATGTA AATATCGGCA ACGGCAACTT CCAGGGCGTC
GAATACGGAA CCCTCCCATC AAACCGGAGC CTTGGCCTGA ACCTGAAACT TTCTTTTTAA
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| Protein sequence | MLKYLLSCFM LVMIATGPLW AQTRQLTGVL RDEQGQTISG ANVVVKGTTR GTTTDAAGEF
RLSIPAENTI LTISSVGYTA KDVPVSSSQT QLSVTLATDD RQLGEVVVTA LGIKREAKAL
SYATQMIKPA QINEVRDGNV LNTLQGKIAG AYITQGSGGP GTGSRIVLRG NRSIQGTNNA
LMVVDGVPIN NSTFGQATSD FGSVANSDGA SNINPDDIEN VTVLRGASAA ALYGSQAANG
VILITTKRGK SGRVSVDINS GVSIDKPFAL PMVQNQFGQG VGGKLDPAVG ASWGAPMTGQ
SYTNYLGNPD TYSAQPNNIR DFFRTAVSLN NSIGITGGSE RSQTYLSYTN NSLQGTVPGN
DLTRHTINLR LSNQISSKLS TDAKVTYINQ SVVNKPRTGE ENAPVIDLYQ IPRNVSLTTA
QNYAAPNSFG LPTPTAWPST LSSIYQNPYW MTNQTAINQY RDRIIGFVLA KYQLTDFLSI
QGRANLDKYF DKNEENYSQG TILWANQAGG KFSRNNIVNT QSWYDLLIEG RNKIGTDLTL
DYQAGAIIQD TRYQSTNSLA DGLNVPNRFN LNFGTNQTLG DDFSRIQTQS LFGQASLAWR
DAIFINASLR NDWSSTLPKP YSFQYPSVGA SVVLSDLLKL SGPLSFLKIN GSFAQVGNGA
DPYLLQTNYS YSQGAGSGFI SRDGTQAIGN LKPEITKSLE LGVDARFLSN RIGATITAYK
TNSINQLLKL GLAPASGFSD QYINAGDIRN MGLEVVINGT AIKTDRLTWD LTLNMGLNRN
KIVSLSPDIK TAFLSGGYGR SASPIVQEGG SYGDIVSYRW AKNANGQYLI GSQTPSGTVS
EASVVSTGLP VATKEQEYIG NFNPKMLLGF TNTFTFKGFS LRFLVDARLG GIAVSGTEMN
LAFSGIPEVT ALNRGGGWVL PGVTAGVAGA DGTTLIGAGK TNAQAITAEQ FWQTVSGKRY
GWGEFFAYDA TNVRLREISI GYGIPVPSNF FIKSARLSFV ARNLFWIYRG SSLLDIPGIG
KRKMWFDPDV NIGNGNFQGV EYGTLPSNRS LGLNLKLSF
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