| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3947 |
|---|
| Symbol | |
|---|
| ID | 8727705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 4733002 |
|---|
| End bp | 4734546 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003388736 |
|---|
| Protein GI | 284038806 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA GTATCAGTCG ATTTCTTTTA TTCCTTCTCC CCCTTTGTGG GTTAGGGGGC
CTTTCGGGCT GTGATGAAGG GTTTACCGAA CTGAATACCA ACCGTGTGAA CCCCACAGCG
CTGGCCCCTT CGCTGGTGCT TAACAAAGCC ATAATCAGCA CCACCTACCT CGATGGCTTT
GGCACACTGG GGATGCTGAC ATACAACTTT GGCATTGTGC AGCAGATCAT TACACCCTAT
GGCAGCTCGC TGTCGGGGGC TAATTACGAT CAGGTCAACG GCAGCAACAC GCCCCTGGTG
TGGGTTAATT TCTACCGTAA TGTGCTCAAG CAGTTAGTTG CCGTACTGGA CCAGACCAAG
AGTGATCCCC TACAAGTCAA CACGTATAAC GCGGCCCGCA TCTGGAAAGC CTACATCTTT
ATGATCCTGA CCGACACCTA TGGCGATGTG CCGTATTTCG AAGCCGGACA GGGCTATACG
AATGAGATCA TCACGCCCAA ATACGATGCG CAGCAGGCTA TCTACAAAGA TATTCTGAAG
GAACTCGACG AAGCATCGGC CGCGCTGACG ACCACCCAGG CCGCCGTAAC CACCGATATT
CTGTACGGGG GCGACGTTGC CAAATGGAAA AAGCTCGGCT ATTCGTTTAT GCTGCGGGCC
GCCATGCGCC TGACCAAAGT TGACCCGGCC ATGGCACAAT CGTACGTAGC CAAAGCTGTA
GCAGGTGGCG TATTCCAGTC CAACGCCGAC AACTCGATTA TCCGGCATAC GGCCATTTAC
AACAACTACA TCGCTAATCA CCTGGCCGCC CGCGAAAAAA CCAACTTCTA CCTCGCAGCC
CCCTTTGTGA ACTACCTGAA GGAGAACAAC GACCCGCGGC TGCCCATTTT CGCCGTGCGT
TACGTAGGTG CCAAAGGTGG TCAGGAACAA ATACCAGCCC GTGCCTCCTC CGACCCGAAA
GTACAGATCG GCATGCCGAT GGGCTACAAT GATGTATCCA TTACAACGAC ACTGGCCCAA
AACGGAGTGG CCAGCCTGTG GGATTACAGC CAGGTGAACC TGAACACGGT GCTCAAGCTG
GATGCACCCG AGTTTCACAT CACCTACTCG CAGGTCCAAC TGCTGTTGGC CGAAGCCGCC
GTTCGGGGCT GGGTGACGGG TGCTGCGGCC GACTACTACG CCAGAGGTAT CCGGGCCAAT
CTGGAACAAA TGGCTTCCTA TGGATCGGCC GTTTCGGAAG CCGATATAAA AGCGTATCTG
GACACTCACC CACTTGATGC GGCCAAAGCG CTGGAGCTGA TCAATACGCA ATACTGGGTG
GCGACCTTCC TGGATGGGAA CGAGTCCTTC GCCAATTTCC GGCGCAGCGG CTTCCCCACC
CTGAAGAAAA ACCCATACCC TGGCTCCGAA GTGAAAGGCG ACTTCATCCG GCGGCTACCT
TACCCGGATA GCGAAATCGT TGTCAACTCC GGCAGTTTGA ACGAAGCCAT CGCCCGGCAG
GGTCCCAACA CGCTCGATAC GCGGGTGTGG TGGGATAAGA AGTAA
|
|---|
| Protein sequence | MKNSISRFLL FLLPLCGLGG LSGCDEGFTE LNTNRVNPTA LAPSLVLNKA IISTTYLDGF
GTLGMLTYNF GIVQQIITPY GSSLSGANYD QVNGSNTPLV WVNFYRNVLK QLVAVLDQTK
SDPLQVNTYN AARIWKAYIF MILTDTYGDV PYFEAGQGYT NEIITPKYDA QQAIYKDILK
ELDEASAALT TTQAAVTTDI LYGGDVAKWK KLGYSFMLRA AMRLTKVDPA MAQSYVAKAV
AGGVFQSNAD NSIIRHTAIY NNYIANHLAA REKTNFYLAA PFVNYLKENN DPRLPIFAVR
YVGAKGGQEQ IPARASSDPK VQIGMPMGYN DVSITTTLAQ NGVASLWDYS QVNLNTVLKL
DAPEFHITYS QVQLLLAEAA VRGWVTGAAA DYYARGIRAN LEQMASYGSA VSEADIKAYL
DTHPLDAAKA LELINTQYWV ATFLDGNESF ANFRRSGFPT LKKNPYPGSE VKGDFIRRLP
YPDSEIVVNS GSLNEAIARQ GPNTLDTRVW WDKK
|
|---|
| |