| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3888 |
|---|
| Symbol | |
|---|
| ID | 8727646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 4663933 |
|---|
| End bp | 4664553 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003388677 |
|---|
| Protein GI | 284038747 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.693202 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTAT CTACCAAGGA ACGCATTCTG AACGCATCGC TCCGGCTCTT TAATGAGCAC
GGAGTCGATG CTGTGCGGCT CCAGCAGATA GCCGAGGAAA TTGGGATCAG CGTTGGTAAT
CTGGCGTACC ATTTCAAGAC GAAAGACGCC ATCATCGAAT CGGTTTACGA ACAGGTACTC
GACGAGTTTG CCCACATTTT CCGTCAGTAT CTACAAGCTC CCGAACTGGC CGCGTTCGAT
CAGCAGATAA GTCTGTACTA TCAATTCTTT CGAAACTATC AGTTCTATCT GGCGGAGTTT
TTTAAGACAA ATTCAGAGCA GACAAGCCAA CAGATCCAAT GGCAGCGGGC GGTCAATAAA
ATGCTCATGC AACTGCGCAG CTGGCTCGAT TTTCATGTGC AGCGGCATAT TATTCGGCCC
GAAACCAGCC TGGGGCAATA CGACCAATTA GCCCAGTCGC TTTGGATGAC GCTCGTATTC
CTGCCTGTTT TCTCGGCCAT GCGTGGTACT GCCGTTGATG AACGAAGCTA CAAGCAATCC
GTTTGGGACC ACCTAAAGCC CCATCTCACC GAAGAAGGCG TCGATGAATT CGAAACGCTG
GTGCTGCCAA CCCTGGCCTG A
|
|---|
| Protein sequence | MPLSTKERIL NASLRLFNEH GVDAVRLQQI AEEIGISVGN LAYHFKTKDA IIESVYEQVL
DEFAHIFRQY LQAPELAAFD QQISLYYQFF RNYQFYLAEF FKTNSEQTSQ QIQWQRAVNK
MLMQLRSWLD FHVQRHIIRP ETSLGQYDQL AQSLWMTLVF LPVFSAMRGT AVDERSYKQS
VWDHLKPHLT EEGVDEFETL VLPTLA
|
|---|
| |