| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3880 |
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| Symbol | |
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| ID | 8727638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | - |
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| Start bp | 4655123 |
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| End bp | 4657459 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | |
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| Product | (NiFe) hydrogenase maturation protein HypF |
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| Protein accession | YP_003388669 |
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| Protein GI | 284038739 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.956436 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTCC ATCTTCATCT TACCGGACAA GTGCAGGGCG TGGGTTTTCG GCCATTCGTC
TGGCAGTTGG CGCGGTCGAT GAAACTGAAA GGGACTGTGA GTAACGGGGC CGATGGAGTA
CATATTTATG TTAATGCCGA TTTGCAAACG GTCAGGGTGC TCACCCGTCG TATTCGGGCC
GAAGCGCCTG CACTGGCCCG GATTCAATCG GTAAAACTTG CCGAAGTTGA ACCAATTGAT
TTCGGTGATT TTACCATTGT GGAAAGTCAG GCTGTGGGTC AGGCATCGCT GCTGCTAACG
CCCGATCTGG CACTTTGCGA TGCCTGCCGG GCCGAGATAA GCGACCCGGC CAACCGGCGG
TTTGGGTATG CGTTCACAAC CTGTACGCAT TGCGGCCCGC GTTACTCCAT TCTTCGCCGA
CTCCCGTACG ACCGGCCAAC GACGACCATG GCCCCGTTTG GTATGTGCGC CGACTGCGAA
CGGGAGTACC ACGATCCATC CAACCGACGG TTCTACGCAC AGACGAACTC CTGCCCGAAT
TGTCTAGTGG AATTGAGCTT GTTTCTGGCA TCAGGACAGT GCATAACCCG TGATCAGTCC
AACATTATCC AACAAAGTAT TGATGTCCTT GCAAGTGGAA GGACGATAGC TGTAAAAGGA
ATCGGCGGCT TTCTGTTGCT ATGCGATGCA ACGAACGCCG ATGCGATTCA TCAACTCCGC
GAACGCAAAC ACCGACCCAC AAAACCACTG GCTGTCTTAT ATCCCAACAT AGACCAGCTA
CAGCAGGACT GCTTCCTCGC TGATGACGAA CGGGCTTTAC TGACAAGTCC GGCATCGCCC
ATTGTGGCAC TCGATAAACG ACCTGAACTA CCCTCAGGGC TGGTTGCCGA TCAGATTGCC
CCCGGCTTAA ACCAGTTGGG CGTCATGTTG CCGTATACAC CCTTGCTGGC GTTGCTAGCC
GATGCGTTTG GTAAACCACT GGTTGCCACG AGTGGAAACC GCAGTGGGTC GCCCATTTGC
TATACCAATG AACAGGCGCT CGACCAATTG TCCGCCGTAG CAGATCTGAT CGTAACTCAT
AACCGGGATA TTGTTGTGCC ACAGGACGAT TCGGTGGTTC GCTTATCGCC TGTTTTTCGT
CAACCCATTA TCCTGCGTCG CTCGCGAGGA TTGGCACCGA CGGTCATGAT GACGGACATT
CCGCATTCGA ATGCAAATGT TTTGGCCCTC GGAGCATCGC TCAAAAGTAC ATTTGCCTGG
CAATTACGGG GTAACACCTA CGTTAGTCAG TACCTTGGCG ACCTGGAAAG CTATGATACA
CAAACCAGCT TTCGTGCCAC ACTCGACCAT TTCCTGACGC TCTTCGACGC CAAACCCGAC
GCCGTTCTAG CCGACCAACA CGAAGGTTAT TTTTCCACCC AACTGGCCCA CGAACTGGCC
AACATCTGGG GTATTCCGCT CGTATCCATT CAGCACCACG AAGCGCATCT GGCGGCCGTG
CTGGCTGAAA ACAAGTTGAT GGAGCAGGCT GAGCCCGTAT TGGGCGTCAT CTGGGATGGA
ACCGGCTATG GGACAGATGG GCAAATCTGG GGTGGCGAGT TTATAAAGTA CCAGCACGGA
GGCTTCGAGC GGGTAGGGCA CTTCGCCTAT TTCGATGCGC TGCTAGGTGA CAAGATGCCC
CGCGAACCCC GGCTTTCGGC GCTGTCACTA GCCTTTAATA TACCGGGTGC TGATGAACTG
TTGCGACCAA AGTTCACCGA GAAAGAATGG AATCTGTATA CAAAGGTAGG TGTCCAGAAT
AAACTGAAAA CCAGTAGCGT TGGGCGGCTC TTCGATGCAG TGGCCGCTCT GCTGGGTCTT
GCCGATAAAG TCAGTTATGA GGGTGAAGCC GCCCTGCTAC TTGAAAGCTG TGCTGCCCGA
TACGTTCGGG TGAATGGCTA CACGACGTCT CAACACTATT TGCCCGAAAC CCTTTTAAAG
GCTCAGGTTC CAACGCAGGC TATCGTAGCG GGTGTTGTGA ACGATCTTCA GGCTGGTCTG
CCAGTCGGTC AGATTGCCGC TACGTTTCAT TACACACTGG TGCAGGCCGT CGCGGCTGTG
GCCCGGCAAA TGGGTGTTCA GCAACTGGCC TTTAGCGGGG GTGTTTTTCA AAACGCGTTG
CTGGTCGACT GGCTGCGGTA CGAACTCGAA CCGGCGTATC AACTCCATTT TCATCAACAG
CTTTCGCCCA ACGACGAATG CATTTCGTTC GGGCAGATCG CTCAGTATAC ATTGATTACA
ACAAACACTG TACACGTCAA AACCGAAACT GCTCATGTGC TTAGCCATTC CCGGTAA
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| Protein sequence | MTFHLHLTGQ VQGVGFRPFV WQLARSMKLK GTVSNGADGV HIYVNADLQT VRVLTRRIRA
EAPALARIQS VKLAEVEPID FGDFTIVESQ AVGQASLLLT PDLALCDACR AEISDPANRR
FGYAFTTCTH CGPRYSILRR LPYDRPTTTM APFGMCADCE REYHDPSNRR FYAQTNSCPN
CLVELSLFLA SGQCITRDQS NIIQQSIDVL ASGRTIAVKG IGGFLLLCDA TNADAIHQLR
ERKHRPTKPL AVLYPNIDQL QQDCFLADDE RALLTSPASP IVALDKRPEL PSGLVADQIA
PGLNQLGVML PYTPLLALLA DAFGKPLVAT SGNRSGSPIC YTNEQALDQL SAVADLIVTH
NRDIVVPQDD SVVRLSPVFR QPIILRRSRG LAPTVMMTDI PHSNANVLAL GASLKSTFAW
QLRGNTYVSQ YLGDLESYDT QTSFRATLDH FLTLFDAKPD AVLADQHEGY FSTQLAHELA
NIWGIPLVSI QHHEAHLAAV LAENKLMEQA EPVLGVIWDG TGYGTDGQIW GGEFIKYQHG
GFERVGHFAY FDALLGDKMP REPRLSALSL AFNIPGADEL LRPKFTEKEW NLYTKVGVQN
KLKTSSVGRL FDAVAALLGL ADKVSYEGEA ALLLESCAAR YVRVNGYTTS QHYLPETLLK
AQVPTQAIVA GVVNDLQAGL PVGQIAATFH YTLVQAVAAV ARQMGVQQLA FSGGVFQNAL
LVDWLRYELE PAYQLHFHQQ LSPNDECISF GQIAQYTLIT TNTVHVKTET AHVLSHSR
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