Gene Slin_3820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3820 
Symbol 
ID8727578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4587925 
End bp4590570 
Gene Length2646 bp 
Protein Length881 aa 
Translation table11 
GC content57% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003388611 
Protein GI284038681 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGGCC AGCAACAGCC TTCCGATACG CCTGCTAATC TGACCCAGCG ACTTAATATC 
GACTTTGCCC TTCAAGCTGC CGGTCTGGGC GTCTGGGAAC TGGACCCGGT TACTAAACAA
GTGCTCTGGG ATGATCGATG CCGTCTGTTA TTTGGCCTGA CCAAAGACAA TCAGCTCCCC
TTTGAACAAG CCATCCAGTA TATCCATCCC GACGATCAGG CCCGCATAGA TCAGGCCGTT
CAACAGGCGC TCTTGGGCCA GTCGAACGGG CAGTATGATG TGACCTATCG AACGGTGGGG
GCCGATGATG GCCTGCTCCG GTGGGTACGG TTCATGGGTA GGGCCGAGTT GACCCCTGCC
GGGCAGGTCT GCCGGTTTGC GGGCGTGGCG CAGGAGGTCA CCCCACAGGT GCTGGCTCAG
CAGCAGGTAC AGCAGGCTCA AGACACCTTG CAGGGCGTGC TGGCCATTGC CGATACGGGC
ATCTGGACCT TGGATGTGGC TACGGGACTA ATTTCGTATT CGCAACGGCT TAAAGAACTC
TTTGAATTTA CCGATGATAC CATCGGGATG GACCGCGTCT ATAATCCCAT TCTTGACGCA
GATCAACTAC GGGTGGCTCA GGCGGTGAAC CGAGCCCTTG ACCCGGCCTC CGGTGGCCTC
CTGGATGAAG AGTATTCGAT CGTGACCCAG CGCACGGGGC GACACCGGAT TGTTCGGGCC
CAGGCCAAAC TGTATGTTGA TGAGCAGGGG ACCCACAAGC TCCAGGGTAG CATGCGCGAC
GTGACGCAGG AGCGCGATAC GCAACTGGCC CTGGAGCAGC AGGTGCAGGC CCGCACCCAG
CAGCTGGAAG CCAGCGAAGC CCGCTATCGT CAATTAGCCC AAAGTTTGGA AGCCCAGGTG
CACCAACGGA CCCAAGCGCT GGTAACCGCC AATGAGGAAC TAGCCGCCAT TAATGAAGAA
CTCCGAATCA GTTATGAACA GGAGCGGCTA GTTCGTCAGC AGTTGGAAAA CAGTGAAGCT
CGTTTTCGTT CCCTTATTGA AGAAGCCCCC ATCGCCACCT GTTTGTTGGT GGGGCGCGAG
CTACGCACTG AAGTAGCTAA CCAACCCATG CTTGACCTTT TTGGCAAAGG CCGGTCGATG
TTTGATAAGC CCTTAAGCGA GGCCATGCCC GAATTGGCCG GTCAGCCGTT CCTTGACATC
CTGGATGAGG TCTTCACCAC CGGTATCGCC TATGAGGCGA AGGGCATTCG GGCGGATGTC
GAAGTGGATG GGGTACTGGG TAGCTACTAT TTTGACTTTA CCTACAAGCC TTTGCGGAAT
GCCAAAGGGA GCGTGTACGC CATCATCGAC ATGGCCATTG ATGTAACCCA GCAAGTGCTG
GCCCGCCAAG AATCCGAAGC CACCCTCCGT CAGTTTCGCA CCTTACTCCA GGCCCTTCCC
AATATGACTT GGACTAACAC GCCTACCGGC GAAGTGGACT TCTACAACGA GCGCTGGTAC
GCCTATACGG GGTTGAGTTT GGAGCAAACC CGCGACTGGG GCTGGCAGGC GGTTGTCCAT
CCCGATGATT TGCCCCAGAC GATGGCCACC TACCAGCAGG CGCTGGCGAG GGGTGAAGAA
TTTATGTTTG AGAACCGGTA TCGGCGGGCC GATGGGCAGT ACCGCTGGCA CCTGAATCGG
GCCTTACCAC TCTACGGTGA GGATGGTCAG CTGGTCAACT GGGTAGGCAC CGCGACCGAT
ATCCATGAAC AGAAGCAAGT AGAAGCCCAA CTCGAACAGC AGGTGCAGGA ACGCACCGAG
CAGTTAGCCG CCAGTAATGA AGAACTGTCG GCTACGAATG AAGAGTTAAC GGCAACCAAC
AAGGATTTCA TCGCTGCCAA CCAGGCACTG GAAGGCGCCA ACCATGACCT GTTGCGCTCG
AATAAGAACC TGGAGCAGTT TGCCTACATT GCCTCCCATG ACATGCAGGA ACCCCTGCGT
AAGATTCAGC AGTTTGGTGA TCTGCTCAAG AGTCAGTACG GGGACCGGCT GGGCGATGGC
GTTGCTTACT TAGAGCGGAT GCAGACCGCA GCCAGTCGCA TGTCGGCGTT GATTCGAGAC
TTGTTAGCCT TCTCGCGGAT CTCCACCACG CAGGTGATTG CCCAACCTGT AGCACTGGAT
CAAGTGGTGA GCCGGGTGTT AGAGACCTTA TCGGTCGTAG TGGAGGAAAG TGGAGCCCAG
GTGGAGGTGA CTAGCTTGCC GGTGGTGCCG GGGGATCGCT CCCAGTTGGA CCAACTGTTT
CAGAACCTGT TGTCCAACGC GGTCAAGTTT CGGCGTACCA GCCCAGGCGG GGAGCTGGTT
ACCCCTCAAA TTCGCATCAA GGCTAATCTA GTCGCCGAAA GCGACCTACC CCCTTCCCTA
CATCCTGCCC GATACGCCCA AACCTATCAC TGCATTGAAG TAGCGGACAA CGGTATTGGC
TTCGAGGAGA AGTATCTGGA CCGCATGTTT GAGGTGTTTC AGCGGTTGCA TGGCAAGAAC
GAGTTTGGGG GTACGGGTAT CGGGTTGGCC ATTGTGCAGA AGGTGGTGAT CAATCATGGG
GGAGCTATCA CCGCTACGAG TGAGCCCGGC CAGGGAGCCA CCTTCTTGGT GTACTTGCCC
GCCTAG
 
Protein sequence
MTGQQQPSDT PANLTQRLNI DFALQAAGLG VWELDPVTKQ VLWDDRCRLL FGLTKDNQLP 
FEQAIQYIHP DDQARIDQAV QQALLGQSNG QYDVTYRTVG ADDGLLRWVR FMGRAELTPA
GQVCRFAGVA QEVTPQVLAQ QQVQQAQDTL QGVLAIADTG IWTLDVATGL ISYSQRLKEL
FEFTDDTIGM DRVYNPILDA DQLRVAQAVN RALDPASGGL LDEEYSIVTQ RTGRHRIVRA
QAKLYVDEQG THKLQGSMRD VTQERDTQLA LEQQVQARTQ QLEASEARYR QLAQSLEAQV
HQRTQALVTA NEELAAINEE LRISYEQERL VRQQLENSEA RFRSLIEEAP IATCLLVGRE
LRTEVANQPM LDLFGKGRSM FDKPLSEAMP ELAGQPFLDI LDEVFTTGIA YEAKGIRADV
EVDGVLGSYY FDFTYKPLRN AKGSVYAIID MAIDVTQQVL ARQESEATLR QFRTLLQALP
NMTWTNTPTG EVDFYNERWY AYTGLSLEQT RDWGWQAVVH PDDLPQTMAT YQQALARGEE
FMFENRYRRA DGQYRWHLNR ALPLYGEDGQ LVNWVGTATD IHEQKQVEAQ LEQQVQERTE
QLAASNEELS ATNEELTATN KDFIAANQAL EGANHDLLRS NKNLEQFAYI ASHDMQEPLR
KIQQFGDLLK SQYGDRLGDG VAYLERMQTA ASRMSALIRD LLAFSRISTT QVIAQPVALD
QVVSRVLETL SVVVEESGAQ VEVTSLPVVP GDRSQLDQLF QNLLSNAVKF RRTSPGGELV
TPQIRIKANL VAESDLPPSL HPARYAQTYH CIEVADNGIG FEEKYLDRMF EVFQRLHGKN
EFGGTGIGLA IVQKVVINHG GAITATSEPG QGATFLVYLP A