Gene Slin_3730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3730 
Symbol 
ID8727488 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4495520 
End bp4498456 
Gene Length2937 bp 
Protein Length978 aa 
Translation table11 
GC content56% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003388528 
Protein GI284038598 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.208606 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGGCC ATCAACCGCC TTCCGATACG CCTGCTAATC TGACCCAGCG ACTTAATATT 
GATTTTGCCC TCCAGGCGGC TGGTCTGGGC GTTTGGGAAT TTGACCCGGT TACTAAACAA
GTTCGCTGGG ATGACCGATG CCGGCAGTTA TATGGGGTGG CTAAAAACAA TCAGATTACC
TATGAGCAAG CCATCCAGTA TATCCATCCC GACGATCAGG CTCGTGTGGA TCAGGCCGTT
CAACAGGCGC TCTCGGTTGA GTCGAACGGA CAATATGACG TGACCTACCG AACGGTGGGG
GCCGATGATG GCCTGCTCCG CTGGGTTCGG TTCATGGGTA AAGCTGAGTC TACTCCCGCC
GGGCGGGTCT ACCGCTTTGC GGGCGTGGCC CAGGAGGTCA CCCAGCAGGT ACTGGCTCGT
CAACAACTGG AAGACAGCGA AGCCCGTTTT CGCTCCCTGA TCGAAGAAGC CCCCATCGCC
ACCTGTTTGT TTGTGGGACG GGAGCTACGC ATTGACCTAG CCAACCAACC GATGATTGAC
ATCTGGGGCA AAGGCCGGTC GGTGTTCGGC AAGCCCTTAA GCGAGGCACT GCCCGAATTA
ACCGGACAGC CGTTTTTGGC CATCCTGGAT GAGGTATTCA CTACCGGTAT CGCCTATGAA
GCGAAGGCCG CCCGGGCGGA GATAGAAGTG GATGGCGTGA TGGGTAACTA CTATTTTGAC
TTCACCTACA AGCCCCAGCG GAATGCCAAT GGGAGCGTCT ATGCCATCAT CGACATGGCC
ATTGATGTAA CCGATCAGGT ACTGGCCCGC CAGCAGCTGG AAGCCAGTGA GGCTCGCTAC
CGGCTTCTAT CATCTGAATT AGAAACACTG GTGCAACAAC GGACCCAGGA ATTAACGGCC
AGTGAAGCCT TTGCCCGTAA CCTATTCCAA AACTCACCCG TGGCCAATCT GGTATTGGTA
GGACAGGATA TGATTATCCA AACCATCAAT GAGGGGATGC TCCACATGTT GGGCCGGGAC
CAATCCATCA TTGGTCAGCC CTTAATGAGT GCGCTGCCCG AGTTAGAATC CACCCCCCTA
CTGGATCGCC TGCGGCAAGT GCTGAAGAGT GGAGAGGTGT ATCATCAACC TGAAGAACAG
ATTGATCTGA TCCGCTTTGA GCGGCCCTAT ACGGGCTACT TTCATTACAT TTACACGCCC
CTAACCGATG CAACCAGCCA ACGCATGGGT GTGGTGGTGA CCGCTATCGA AGTAACTACT
CAGGTGCTGG CCCGCCAGCA CCTTGAGGAG GTGGAGGCCC GGTTGCGCAC CATCATTACC
AATCTGCCGT CGGCTACGGT CGTCTTTCGG GGGCGTGAGT TGGTGGTGGA AAGTCCAAGT
AAATACTTCA TCGACCTCAT CGACCGGGGG CCCGACGTGG TCGGTAAGCC ACTGGGTGAG
CTGATGCCGG AACTGGAGAG CCAGTCGTAC CTCAACATCC TGGACCAGGT CTACACCACC
GGCCAGCCTT ACCGGGCTTT TGGGGCGCCG GTTAGTATTC GTCAAGCAGA CGGATCGACC
GTACTCGACT ACTTTGATCT GATTTATACT CCTCTCTTCA ACGCGCAGGG TCAGGTGTAT
GCCATTCTCA GCGTAGCCAC CAACGTAACC GAGCAAATAA GGGCTCATCA ACAAGTGGAA
AGAAGTGAAA CCGCTTTACG CAACGCCGTC GAACTAGCCG AATTGGGCCA CTTTAGCGTC
GATGTGGGGA CCAACCTCAT CACCGTATCC CCACGGGTAG CCGACTGGTT TGGCTTTGAT
GACGTAGTTG CCGATGCTCA ATCGTTTATC GATGGCGTCG GCCAAAGCGA CCGCCAGCTG
GTAGCCACCC GTCTGGCTAA CGCTCTGCAA CCGGGCTCTG ACGGGCGCTA TGATGTAGAA
CACTCCGTCA TTCATGCCAA AACGGGTCAC CAGATCATCC TACACGTCTT GGGCCAACTT
TACAAGAATG ACGCTGGGCA AGTCCTGCGG CTAGAGGGCA TTTGTCAGGA CATCACTCCT
CAACGCGAGC AACAAGCTGT CTTGGAGCAG CAAGTGCAGG AGCGAACCCA AGAGCTAGCC
GCGGCTAATG AGGAACTAGC GGCCAGCAAT GAGGAGTTAA GTGCAACCAA CAAGGAGGTT
CAGATCGGCA ACCAAGCTCT GGAAACGGCT AACACCGACC TGTTACGCTC GAATCAGAAC
CTGGAGCAGT TCGCCTACAT TGCCTCCCAT GACCTGCAGG AGCCGCTGCG TAAGATCCAG
CAGTTCGGTG ATCTGCTCAA GAACCAATAC GGCGACCACC TGGGCGATGG CCTGGCTTAC
CTGGAGCGTA TGCAGACCGC AGCCAGTCGC ATGTCGGTGT TGATCCGAGA CTTGTTAGCT
TTCTCGCGGA TCTCCACCAC GCAGGTGATT GCCCAACCCG TGGGGCTCAA TCAGGTGGTG
AGCCGGGTGT TGGACGCCTT ATCGGTCGTG GTGGAGGAAA GTGGGGCGCA GGTGGTTGTG
ACTAGCTTGC CGGTAGTGCC GGGGGATCGC TCCCAGTTGG ACCAACTGTT TCAGAACCTG
TTGTCCAACG CGGTCAAGTT TCGGCGTACC AACCCACTCG GGGAGCTGGT TACCCCTCAA
ATCAGTATTA AGGCCAGTCT GGTAGCCGAA AGCCAACTAC CCCCTTCGGT ACACCCTTCG
CGGTATGCCC AAACCTATCA CTGCATCGAG GTAGCCGACA ACGGCATTGG CTTTAAGGAG
AAGTATGTGG ACCGCATGTT TCAGGTGTTT CAGCGGTTGC ACGGCAAAAA CGAATTTGCC
GGTACAGGCA TCGGGTTGGC CATTGTGCAG AAGGTGGTGA CCAATCACGG GGGGGGCATC
ACCGCGACGA GTGAGCCAGG CCAGGGGGCA ACCTTTAGTG TGTACTTACC AGCCTAG
 
Protein sequence
MNGHQPPSDT PANLTQRLNI DFALQAAGLG VWEFDPVTKQ VRWDDRCRQL YGVAKNNQIT 
YEQAIQYIHP DDQARVDQAV QQALSVESNG QYDVTYRTVG ADDGLLRWVR FMGKAESTPA
GRVYRFAGVA QEVTQQVLAR QQLEDSEARF RSLIEEAPIA TCLFVGRELR IDLANQPMID
IWGKGRSVFG KPLSEALPEL TGQPFLAILD EVFTTGIAYE AKAARAEIEV DGVMGNYYFD
FTYKPQRNAN GSVYAIIDMA IDVTDQVLAR QQLEASEARY RLLSSELETL VQQRTQELTA
SEAFARNLFQ NSPVANLVLV GQDMIIQTIN EGMLHMLGRD QSIIGQPLMS ALPELESTPL
LDRLRQVLKS GEVYHQPEEQ IDLIRFERPY TGYFHYIYTP LTDATSQRMG VVVTAIEVTT
QVLARQHLEE VEARLRTIIT NLPSATVVFR GRELVVESPS KYFIDLIDRG PDVVGKPLGE
LMPELESQSY LNILDQVYTT GQPYRAFGAP VSIRQADGST VLDYFDLIYT PLFNAQGQVY
AILSVATNVT EQIRAHQQVE RSETALRNAV ELAELGHFSV DVGTNLITVS PRVADWFGFD
DVVADAQSFI DGVGQSDRQL VATRLANALQ PGSDGRYDVE HSVIHAKTGH QIILHVLGQL
YKNDAGQVLR LEGICQDITP QREQQAVLEQ QVQERTQELA AANEELAASN EELSATNKEV
QIGNQALETA NTDLLRSNQN LEQFAYIASH DLQEPLRKIQ QFGDLLKNQY GDHLGDGLAY
LERMQTAASR MSVLIRDLLA FSRISTTQVI AQPVGLNQVV SRVLDALSVV VEESGAQVVV
TSLPVVPGDR SQLDQLFQNL LSNAVKFRRT NPLGELVTPQ ISIKASLVAE SQLPPSVHPS
RYAQTYHCIE VADNGIGFKE KYVDRMFQVF QRLHGKNEFA GTGIGLAIVQ KVVTNHGGGI
TATSEPGQGA TFSVYLPA