Gene Slin_3713 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3713 
Symbol 
ID8727466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4473740 
End bp4475881 
Gene Length2142 bp 
Protein Length713 aa 
Translation table11 
GC content55% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003388514 
Protein GI284038584 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000481 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGGCG ACCAGCAGCC CCCTGACTCA ACGACTACGC TTACTCAACG ACTTGACATT 
GCTTTTGCCC TGAAAGCGGC CGACCTTGGC GTCTGGGAAA TGGATCCGGT CACCAAACTC
GTGAATTGGG ATGATCGATG TCGAGCGTTG TTTGGACTCG CCAAAGACAA TCAGCTGCCT
TACCAACAGG CCATCTTATC GATTCACCCT GACGATGTCG CGCGCGTCGA TCAGGCCGTT
CAACGCGTCC TGGCGCCTGA TTCGGGTGGC CAGTATGACG TGACCTACCG GACCATTGGG
GCTGACGATG GACAGCTACG GTGGGTACGT TTTATCGGCA AGGCCGAGTT CACCCAATCC
GGCGAACCTG TCCGCTTCGC GGGAGTAGCT CAGGAGGTAT CTCCGCAAGT GCTGTCCCAG
CAGAAAATCG AGGAGGTAGA GAACCGTTTA CAGACCATTA TTACCAATTT GCCCTCGGCT
ACGGTCGTCT TTCGAGGTCG CGCATTAGTC GTCGAGACAC CTAGCCAATA TTTCATTGAT
ATCATTGGTC GGGGACCCCA TGTGACGGGT AAACCGTTGG GCGAATTAAT GCCCGAACTG
GAAAGCCAGT CGTTTCTGGC GATTCTGGAT GAAGTCTACA CATCGGGACA ACCGTTTCGA
GCCTTTGGCA CACCGGTTGA GATTCATCTG GACAATGGCT CCACGACGCG CGATTACTTT
GACCTAATCT ACACGCCCCT CTTCGATGCG CAAGGGCAGA CCTATGCCAT TCTAAGCGTA
GCGACCAATG TTACGGATGT CATCAAGGCC CAGCAACAGG TGGAGCAAAG TGAAGCGAGG
TATCGGCTTT TATCGGCTCA GTTAGAAGAG CAGGTCCAGC AGCAGGTAAT GATTCGCCAG
CAACTGGAGG AAAGTCAACT CATCTTACAC TCCATGATTG ATCTGGCCGA GCTGGGTACC
TATACCATTG ACCTGGCAAC GAATCAGTTG ATAAAATCAC CCCGGGTTGC CGCCTGGTAT
GGACTCCCTG AAATCACCGA TGTGGCGACA TCGCTGGGTG TGATTCAGGC TAATGATCAA
GAGCGGGTGA ATCAGGCCTA TACGTCGGCT CTTCAAGTGG GTTCTACAGG CTCTTACCAG
GTTGAATACA CCGTCATTAA TCCGTTGACC AGGCAAACCT ACATCCTGCA AACGGTTGGG
CAGTCTCGGC GGAATGGGAG TGGTCAATTT ACCTACGTGG ATGGTCTGGT CAGAGATGTG
ACGAGTCAAC GGCAGGCCCA ATTGGCCCTG GAGCAGCAGG TCCAGGCGCG CACCAAAGAA
CTGGCCGCCA TCAACGGGGA ATTGCTGTCT ATCAACGAGA GCTTTGTCAG GGCTAACCTA
GCCCTGGAAA CGGCCAACCA TGACCTGTTA CGTTCCAATC AGAACCTGGA GCAGTTCGCC
TACATTGCTT CTCATGACTT GCAGGAGCCC CTGCGCAAGA TCCAGCAGTT CGGTGATCTG
CTCCAGAGTC AATATGGAGG CCAGCTTGGG GATGGAGCCG CTCATTTAGA GCGGATGCAG
ACCGCCGCCA GTCGCATGTC GGTGTTAATT CGCGACTTGT TAGCCTTCTC CCGGATTTCC
ACCACCCAGG TGATTGCCCA ACCCGTGGCC CTGGATCAGG TGGTTAGTCA GGTGTTAGAT
ACCTTGTCTA TAGTGGTTGA GGAAAGTGGC GCGCAGGTGG TTGTGACTAG CTTGCCGGTA
GTGCCGGGGG ATCGCTCTCA ATTGGACCAA CTGTTTCAGA ACCTGTTGTC CAACGCGGTC
AAGTTTCGGC GTGCCAGCCC AGGCGGGGTG CTGGTTCCCC CTCAAATCCG GGTTAAGGCC
AGTCTGGTAG CCGAAAGCCA ACTACCCCCT TCGGTACACC CTTCTCGGTA TGCCCAAACG
TATCACTGCA TCGAGGTAGC CGACAACGGC ATTGGTTTTG AGGAGAAGTA TGTGGGCCGC
ATGTTTCAGG TGTTTCAGCG GTTGCACGGC CGGAACGAGT TTGCCGGTAC GGGCATCGGG
TTGGCCATTG TGCAGAAGGT GGTGACCAAT CATGGGGGAG CCATCACCGC GACGAGTGAG
CCCGGCCAGG GAGCTACCTT TTGGGTGTAC TTGCCGGCCT AA
 
Protein sequence
MTGDQQPPDS TTTLTQRLDI AFALKAADLG VWEMDPVTKL VNWDDRCRAL FGLAKDNQLP 
YQQAILSIHP DDVARVDQAV QRVLAPDSGG QYDVTYRTIG ADDGQLRWVR FIGKAEFTQS
GEPVRFAGVA QEVSPQVLSQ QKIEEVENRL QTIITNLPSA TVVFRGRALV VETPSQYFID
IIGRGPHVTG KPLGELMPEL ESQSFLAILD EVYTSGQPFR AFGTPVEIHL DNGSTTRDYF
DLIYTPLFDA QGQTYAILSV ATNVTDVIKA QQQVEQSEAR YRLLSAQLEE QVQQQVMIRQ
QLEESQLILH SMIDLAELGT YTIDLATNQL IKSPRVAAWY GLPEITDVAT SLGVIQANDQ
ERVNQAYTSA LQVGSTGSYQ VEYTVINPLT RQTYILQTVG QSRRNGSGQF TYVDGLVRDV
TSQRQAQLAL EQQVQARTKE LAAINGELLS INESFVRANL ALETANHDLL RSNQNLEQFA
YIASHDLQEP LRKIQQFGDL LQSQYGGQLG DGAAHLERMQ TAASRMSVLI RDLLAFSRIS
TTQVIAQPVA LDQVVSQVLD TLSIVVEESG AQVVVTSLPV VPGDRSQLDQ LFQNLLSNAV
KFRRASPGGV LVPPQIRVKA SLVAESQLPP SVHPSRYAQT YHCIEVADNG IGFEEKYVGR
MFQVFQRLHG RNEFAGTGIG LAIVQKVVTN HGGAITATSE PGQGATFWVY LPA