| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3694 |
|---|
| Symbol | |
|---|
| ID | 8727447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 4452613 |
|---|
| End bp | 4454154 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | Integrase catalytic region |
|---|
| Protein accession | YP_003388495 |
|---|
| Protein GI | 284038565 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00066117 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00045424 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACC AGCGTCTTCC TATGCACCTA CTCCGTCAGA TTCTGCTTCT CCAGCAGCAA
CATAAGTCTA TCCGGGATAT TGCCCGTTCG CTAGGCCTGG CTCGCAATAC CGTCCGGGGC
TACCTGCGCA TGCTTCCCGA TCCGGCAACG CTTTCCCTCC CGCAACTCTC CGACCAACAG
TTGGATGAGC TGGTACAAAG TCGTCCGCCT GCGCCCTCAC CCGACGCCCC CCTAACTATT
CTTCAACAAC GATTCGCTCA GATTGACCGC GAACTGACCC GACCCGGCGT TACCCGGTAT
AGTCTTTGGC TGGATTACAA AGCCGAACAT CCCAACGGCT ATCAGTATAC GCAGTTCTGC
CACTATTATC AGCTTTGGAG CCAGCGGCAG CAGACCAGCA TGCACATTGA GCACAAAGCG
GGCGACAAAC TCTTCGTCGA CTTTGCGGGC AAGCGGCTCT CGCTGGTCGA CCAGACAACA
GGGGAGGTTA GGCCGGTCGA GTTCTTCGTG GCCGTGCTGG GTTGCAGTCA GCTCACTTAC
GCCCAGGTAG TGGCTACTCA GCGCAAGGAG GACTTCATCA CCGCCCTGCA AAACGCCCTG
CATTACTTCG GGGGCGTACC AGCGGCCATC GTGCCCGATA ACCTCAAAGC GGCTGTGATT
CGCTCGGATC GCTATGAACC CCAGATCAAT GAGACGCTGG CTGACTTTGC GCTCCATTAT
CAAACGACGA TCCTGCCGGC CCGGAGCGGT AAGCCCCGCG ACAAAGCTCT GGTCGAAGGA
GCCGTCAACA TCCTCTATCG ACGCATCTAC GCTCCCCTGC GCAATGAGGT CTTTCATCGA
CTTGACGATC TCAATGCGGC TATCCGCCCC TTACTCGACG CCCACAACCA AATGCGCTTT
CAGAACCGGG GCCATAGTCG GCAGTCGCAG TTCGAGGAGC GGGAGCGAAT GCACTTGATG
GGGTTGCCCA ACACGGCTTA TCTCATCAAA CACTATGCGG GGAGCCGGGT TCAGAAAAAC
GGCCATGTAC TGCTGTCAGA AGACAAGCAT TATTACAGCG TACCCTATCG CTACATCGGC
CAGTGGGTAC GGCTGATCTA CACGGCGTCA AGCGTTGAAG TCTACTGCCA GCACCAGCGT
ATTGCGACTC ACCAGCGATT ACAGGGACAG TACCATTACT CGACACTCAA AGAGCATTTG
CCCCCAGCCC ATCAGTGGAT CAGTGACTGG AGCCCGGAGA CGTTCGTCCG TCGGGCCGAC
CGCATTGGCC CCCAAACCCG GCAGGCCGTC GAAGCCATCC TAACGAGCCG GGCGCATCCC
GAACAGGCTT ATAAGTCGTG CCAGGGTGTA CTAAGTCTGG AAAAGAAAGT GGGTAGAGAA
CGTCTGGAGC GGGCCTGCCA ACGGGCGTTG TGCTACCAGA GCGTGAGCTA CAAAGTCATC
CGATCCATCA TCGAACGCGG GCTGGATACG CTCTCCGATG CCAGTCCTGT CAGCTCAGTA
CCCAGCCATG AAAACATCCG GGGCGCATCA GCCTACCAGT AA
|
|---|
| Protein sequence | MANQRLPMHL LRQILLLQQQ HKSIRDIARS LGLARNTVRG YLRMLPDPAT LSLPQLSDQQ
LDELVQSRPP APSPDAPLTI LQQRFAQIDR ELTRPGVTRY SLWLDYKAEH PNGYQYTQFC
HYYQLWSQRQ QTSMHIEHKA GDKLFVDFAG KRLSLVDQTT GEVRPVEFFV AVLGCSQLTY
AQVVATQRKE DFITALQNAL HYFGGVPAAI VPDNLKAAVI RSDRYEPQIN ETLADFALHY
QTTILPARSG KPRDKALVEG AVNILYRRIY APLRNEVFHR LDDLNAAIRP LLDAHNQMRF
QNRGHSRQSQ FEERERMHLM GLPNTAYLIK HYAGSRVQKN GHVLLSEDKH YYSVPYRYIG
QWVRLIYTAS SVEVYCQHQR IATHQRLQGQ YHYSTLKEHL PPAHQWISDW SPETFVRRAD
RIGPQTRQAV EAILTSRAHP EQAYKSCQGV LSLEKKVGRE RLERACQRAL CYQSVSYKVI
RSIIERGLDT LSDASPVSSV PSHENIRGAS AYQ
|
|---|
| |