| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3562 |
|---|
| Symbol | |
|---|
| ID | 8727315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 4295401 |
|---|
| End bp | 4297611 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit I |
|---|
| Protein accession | YP_003388368 |
|---|
| Protein GI | 284038438 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.754921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTTA CAACCAATCA ACCACTTCAA GTCATTTCGC CCGACAGGTC CGCCATCGGG
CAGCCACCAC CGGGCCAGCG ACCCGTCACT GAACGATTTG CCTACGACAA TACCATCGTG
CGCAACTTCG CCGTGGCCTC CATCATCTGG GGTATCATCG GTATGCTCGT TGGGGTAATC
GTGGCCAGTC AGCTTTTTGC GCCAGCCGCT AACCTGGGCA ATCAGTACAC CACCTTCGGG
CGGATACGTC CACTGCACAC CAACGCCGTT ATTTTCGCAT TTGTAGGCAA CGCCATTTTT
ATGGGTGTCT ATTATTCGCT GCAGCGGCTT TGTAAAGCCC GGATGTTTTC GGACCTGCTC
AGCAAGATTC ACTTCTGGGG CTGGCAACTG ATTATTCTGT CGGCGGTGGC TACCCTGCCG
CTGGGCCTGA CGACTTCCAA AGAATACGCT GAACTCGAAT GGCCCATCGA TATTGCCATC
ACGCTGATCT GGGTCGTATT CGGTATCAAT ATGTTCGGTA CGATTGTGAA ACGGCGGGAA
CGTCACCTGT ACGTGGCCAT CTGGTTTTAC ATCGCTACGT TCGTAACGGT TGCCGTGCTG
CACATTGTCA ACTCAATGGA AATGCCCGTT AGCTTTCTGA AAAGCTATTC GATGTACGCC
GGTGTTCAGG ATGCGCTGGT GCAGTGGTGG TACGGTCACA ATGCCGTGGC TTTCTTCCTG
ACCACGCCAT ATCTGGGCAT GATGTACTAC TTCCTGCCTA AAATGGCGAA CCGCCCCGTG
TATTCGTACC GGCTGTCGAT TCTGCACTTC TGGGCGCTGA TATTCCTGTA CATCTGGGCC
GGTCCTCACC ACTTGCTGTA TAGCTCTCTG CCCGACTGGG CGCAGTCGCT GGGCGTTGTG
TTCTCCATCA TGCTCATTGC GCCATCCTGG GGTGGTATGA TCAACGGATT GCTGACCCTG
CGGGGCGCCT GGGATAAGGT TCGCGAAGAT GCTATCCTTA AATTCATGGT AGTGGGCCTG
ACTGCCTACG GTATGGCCAC GTTTGAAGGA CCCCTGCTGT CGCTCAAAAA CGTAAACGGC
ATTGCACACT TTACCGACTG GATCGTGGCG CACGTTCACG TGGGTGCCCT GGGCTGGAAC
GGCTTCCTCA CCTTCGCCAT GCTGTACTGG CTCATTCCAC GCATGTACCA CACCCCGCTG
CACTCGAAGA AACTGCTGAA CGTCCACTTC TGGCTTGGTA CGCTCGGTAT CCTGTTCTAC
GCGGTGCCCA TGTACATATC GGGCTTCACG CAGGGGATGA TGTGGAAAGA ATTTACGCCT
GAAAGTACCC TCCGCTACGG CAACTTCCTC GAAACAACGC TGCAACTGCT GCCCATGCAC
CGGATGCGGG CCATTGGCGG ATCGCTTTAC CTGATAGGTG CTATTCTGAT GGGTTACAAC
CTGTTCAAAA CGATGGCTGT TGGTACGCTG ACGGCGAATG AACCGGCCGA AGCACCGGCC
CTGGCCGTAG CGTACAAGCC CGAAGGCAGC GATACGTTCT GGCACCGCTG GCTGGAACGC
AAACCGTTCC CGCTGCTGGT TGCCTCCCTG GTGGTTATCC TCATTGGCGG TCTGGTCGAA
ATGGTGCCGA CGTTCATGGT GAAGAGTAAC GTACCGACCA TTGCTGCCAT TCAGCCCTAC
ACGGCGCTGG AAGTGGAAGG CCGCGACCTC TACATCCGCG AAGGCTGCGT AGGCTGCCAC
AGCCAGATGA TCCGGCCGTT CCGCTCCGAA ACCGAGCGCT ACGGCGAGTA CTCCAAAGCG
GGTGAGTTTG TCTACGATCA CCCGTTCCTG TGGGGCAGCA AGCGTACCGG TCCCGACCTT
CACCGCGAAG GGGGTAAGTA CCCGAATTCC TGGCACTACC ACCACATGCG CGACCCGGCC
TCTATGTCGC CCGGCTCCAT TATGCCGCCG TACCCCTGGT TGCTGGAACA GAAACTGGAC
GTGTCGCACA CGGAAGCCAA GCTGAAAGCC CTCAAAAAAG TAGGTGTTCC CTACGAAGAC
GTGACCATCC GGTACGCGCA GGACGACCTG CAAAAACAGG CGGGCGACAT CAGCAGTCAA
CTGGCTAAAG ATGGCATCAA GGTGCAGCCC GACCGTGAAA TCGTGGCCCT CATCGCCTAC
CTGCAACGCC TGGGAACGGA TATAAAGAAA ATGGAAACAG TTGTGAAATA A
|
|---|
| Protein sequence | MNVTTNQPLQ VISPDRSAIG QPPPGQRPVT ERFAYDNTIV RNFAVASIIW GIIGMLVGVI
VASQLFAPAA NLGNQYTTFG RIRPLHTNAV IFAFVGNAIF MGVYYSLQRL CKARMFSDLL
SKIHFWGWQL IILSAVATLP LGLTTSKEYA ELEWPIDIAI TLIWVVFGIN MFGTIVKRRE
RHLYVAIWFY IATFVTVAVL HIVNSMEMPV SFLKSYSMYA GVQDALVQWW YGHNAVAFFL
TTPYLGMMYY FLPKMANRPV YSYRLSILHF WALIFLYIWA GPHHLLYSSL PDWAQSLGVV
FSIMLIAPSW GGMINGLLTL RGAWDKVRED AILKFMVVGL TAYGMATFEG PLLSLKNVNG
IAHFTDWIVA HVHVGALGWN GFLTFAMLYW LIPRMYHTPL HSKKLLNVHF WLGTLGILFY
AVPMYISGFT QGMMWKEFTP ESTLRYGNFL ETTLQLLPMH RMRAIGGSLY LIGAILMGYN
LFKTMAVGTL TANEPAEAPA LAVAYKPEGS DTFWHRWLER KPFPLLVASL VVILIGGLVE
MVPTFMVKSN VPTIAAIQPY TALEVEGRDL YIREGCVGCH SQMIRPFRSE TERYGEYSKA
GEFVYDHPFL WGSKRTGPDL HREGGKYPNS WHYHHMRDPA SMSPGSIMPP YPWLLEQKLD
VSHTEAKLKA LKKVGVPYED VTIRYAQDDL QKQAGDISSQ LAKDGIKVQP DREIVALIAY
LQRLGTDIKK METVVK
|
|---|
| |