Gene Slin_3488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3488 
Symbol 
ID8727241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4220531 
End bp4222540 
Gene Length2010 bp 
Protein Length669 aa 
Translation table11 
GC content52% 
IMG OID 
Producthypothetical protein 
Protein accessionYP_003388295 
Protein GI284038365 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC ATTACGTATT CCAGAAGATA CACTACCTGA CATGTATGTA CGTGTTAGGC 
ATGGTAGTCA ACCTTCAAGC CCAGTCAACC CAGCCGCCCG TTTCGCAGTG GCAATACACG
ATCGAGCGTA GTGAACCAAC TAAAACCGGT CAATCACGAC TGGCGAAAGC AACGAATGGC
GATTATGGTG TGTTAAGCGG AAACACGCTT ACCCGACTGT CGTTGACCGG TAAGCCAATA
TGGTCGAAAC CCATACCAGG TCTTTACGCC GACAGTTCAC GAACCAGAAC AGCTGCTCAG
GAAACGATAG GCTTATCCGC AACGAAAGAT GACGGATTTG TAATGCTGGT ACTGGATGTC
AGCAATCGGT ATTATGTAAC CAGGCTGGAT TCGGCCGGTA ATGAAACCTG GACCAGACTG
GTAGCCCGCG CCAATGCAGG CCCGGCAGTT CAGATAAAAG AAACAGCTTT GGTGGTTACA
GCCGATGGCG GTTTATTACT CGTTGGCTCG TATACGGACG TGCTGTCTTA CCTGACCATA
ACCAAACTGA ATGCGGAAGG GCTTATTGTA AGCCAATGGC GTGTTAACTA CTCAGGCCCG
ACACAACTGG TTACGCCGGT TATTAATCAA CTTTTGACGA CACCTGATAA CGGCTACTTA
CTGGTTGGCC GGGTAAGTGG CGCAACCGCA AAAGATAGTC GTGGACTGGC CCTACAGCTA
AGTGCTCAAT TGAACATTAT CTGGCAGAAA ACGTATACCA GTCTGTCTGC CATTCAGCGC
ATTGTCGAAA ATCAAGCGAT TAAAGGATCT TATATAGCCG TAGGTTCCGG TCTAGGAAAC
AGTGCCCAGG CAATTACGCT GGCCCCCGGC AAACCAGACG ATGGACAGCT GCTGGCTTCT
CTGCCCGGCG TTGTTTCGGT TGTTTCGCTC GTCAATGACG GGACCGGGAA TATCACCGTA
CTCGATGCAG CACCCACCAA CAATGGCGAC TTTCGCCTGA CCAATGGACG CCTACCGACA
ACATTTTACT GGACGAAGAA CTACGGTGGA TCGGGGGCGG ACATTCCGAC GGATATTCTC
TCTACTGACG ACGGTGGCTA CCTGGTTGTG GGCACTACCA CCTCAACCAA TGGCGATGTT
GTTGGCAAAC CAACGGGTAC ACTAGCTACC TGGGTTCTTA AATTAGGTAC TTCTCCCCAG
GTTACCACGC TGCGCATCCT GCCACCGACT TACAATTGCC AAACCGGGTT CATCAGCTTC
CAGACCACTG GTGGCGATGG GTCACCGATA ATTTACACGA CTCCGGGAAT TGGCCGGGCC
AATACGACCG ATACGTTCGG TACGGTGGAT GATGAGTTGC GCAGCAATAC GATGACCATT
ACCATTCAGG CTACCCAAAG CGGCCAGACG GTTCGTTATG CGGTTGATCT GGCGGCCTAC
TGCCAAACGA GTTCGCCAAC CACCAGCACC GCCCTAACCG ACACTTTAAA ACTGACTCCT
CCAACCTATA ACTGCCAGAC GGGTGCCATT ACGTTTTATA GCACTGGTGG TGATGGCACA
CCCGTTGAAT ATGCCGCGAC GGGTATTACC GACTGGACCA GAAACCCTCA CCAGTTTGTA
GAGCCTGCTT TACGCACCGC TGCCAATATT GAGCCGCTGC ACCTCATGGC CCGTCAGGGC
GGTAAAATCG TTTCGTATGT GTTTGACCTG AAAGCCGCCT GTGGCCGGGC CAGATCCGGT
GCCGACGAAC GTACGGCAGT TGTACAGGTA ATGTTACGGG GAAATCCAGT GCACGAAACG
GCGGTGATTG AGGTGGCAGG TGCTGGGGGT CAATCCATAG CGTTCCGATT GGTCGACATC
CGCGGTCAAC TCCTCGAACA GCGAATAGTT GAAGAGGCCG GTGAGTCCGA GCAACAACGC
TTCGACCTTC GTCAACAAGC GGCTGGCACG TTCCTACTTC ATACGACCGT AGAGGGGCAC
GTAAAAACGC TCAAGATAGT GAAGGAATAA
 
Protein sequence
MKKHYVFQKI HYLTCMYVLG MVVNLQAQST QPPVSQWQYT IERSEPTKTG QSRLAKATNG 
DYGVLSGNTL TRLSLTGKPI WSKPIPGLYA DSSRTRTAAQ ETIGLSATKD DGFVMLVLDV
SNRYYVTRLD SAGNETWTRL VARANAGPAV QIKETALVVT ADGGLLLVGS YTDVLSYLTI
TKLNAEGLIV SQWRVNYSGP TQLVTPVINQ LLTTPDNGYL LVGRVSGATA KDSRGLALQL
SAQLNIIWQK TYTSLSAIQR IVENQAIKGS YIAVGSGLGN SAQAITLAPG KPDDGQLLAS
LPGVVSVVSL VNDGTGNITV LDAAPTNNGD FRLTNGRLPT TFYWTKNYGG SGADIPTDIL
STDDGGYLVV GTTTSTNGDV VGKPTGTLAT WVLKLGTSPQ VTTLRILPPT YNCQTGFISF
QTTGGDGSPI IYTTPGIGRA NTTDTFGTVD DELRSNTMTI TIQATQSGQT VRYAVDLAAY
CQTSSPTTST ALTDTLKLTP PTYNCQTGAI TFYSTGGDGT PVEYAATGIT DWTRNPHQFV
EPALRTAANI EPLHLMARQG GKIVSYVFDL KAACGRARSG ADERTAVVQV MLRGNPVHET
AVIEVAGAGG QSIAFRLVDI RGQLLEQRIV EEAGESEQQR FDLRQQAAGT FLLHTTVEGH
VKTLKIVKE