Gene Slin_3470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3470 
Symbol 
ID8727223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4202093 
End bp4203778 
Gene Length1686 bp 
Protein Length561 aa 
Translation table11 
GC content51% 
IMG OID 
Productamino acid permease-associated region 
Protein accessionYP_003388277 
Protein GI284038347 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0308593 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTTT TTCGCAAAAA GACCGTAACC CAAATCCTGA GCGATGCCTC CGAAGGTGAG 
TCGAGCAAAT TAGTAAAGAC GCTGGGCGTC CGCGATTTAA CGTCATTCGG CATTGCGGCA
ATCATTGGGG CCGGTATTTT CAGCACCATA GGGCTGGCGA GTTATAATGG GGGGCCTGCG
GTATCGCTGT TGTTTGTCTT CACTGCTATT GCCTGCGTTT TCACCGCGTT GAGTTACGCA
CAATTTGCCA GTACAGTGCC CGTGAGTGGC AGTGCGTACA CGTATGCCTA CGTGGCGTTC
GGCGAAATTT TTGCGTGGGT AATCGGTTGG GCACTTATTC TTGAATATGC GGTCAGCAAC
ATGGTTGTGG CCATCTCCTG GTCGGAGTAT TTTACCTCCA TGCTCAGCGG GTTCGGCATT
ACGTTTCCTA AATATTTTGC CACGGACTAC GGTTCGGCGT CCCGCGCCTT TGAACTTGTG
CAGCAAACAA AACAGGCGGG TACGGCCCTG ACCACCTTAC CTGAAAATAC GCGTCTGTTG
GCTGATGCCT ATGCCAATGC GCCTGTTGTG GGCGATCTTC ACATTATAGC CAACTTGCCT
GCCGGTGCCA TAACTGCCTT GATCACCGCC CTGGTTTACA TTGGCATTAA GGAATCACGA
ACGGCAAGTA ACATACTGGT TGTTCTCAAA CTGGGTGTAA TTGCTTTGGT GATAGGCGTA
GGGGCTTTCT ACGTAAAACC GGCAAACTGG TCGCCGTTCG CACCCAATGG CATATCGGGC
GTGCTGAGTG GCGTGGCATC GGTGTTTTTC GCCTTTATCG GCTTCGACTC TATTTCAACA
ACGGCCGAGG AGTGTAAGAA CCCCCAACGC GATTTACCTC GTGCCATGCT CTATTGCCTG
GGGATTTGTA CGGTTCTCTA CGTCTTGATT ACGTTGGTAT TGACCGGTAT GGTAAACTAC
AAGGAGTTAG GCGTTAGTGA TCCGCTGGCC TATGTATTCC AGAAAGTAAA CCTCGATTTT
GTGGCTGGCG TCATTTCAGT AAGTGCAGTT GTTGCTATTA CCAGCGCGCT GTTAGTTTAT
CAGTTAGGGC AGCCGCGTAT CTGGATGACC ATGAGCCGGG ATGGTCTGCT CTGGAAACGG
TTTTCCCGGA TTCACCCGGT CTATAAGACA CCTTCATTCG CGACGATTGT CACGGGATTT
CTGGTGGCGA TACCCTCGCT GTTCATGGAT CTAAAGTTCT TCGTGGACTT AACCAGCGTT
GGCACTTTTT TCGCGTTCAT TCTGGTTTGC GCGGGTATTT TGTATCTGGA TGCCAAAGGG
TTGACAGCCC AATCGAAGTT TAAAGTGCCT TATATCAACG GTAAATACAT TATCGGTGTG
GTGCTGCTAG CCGTACTGGC GTATGCGTTG ACAAGGCCCG ATGTAAATGT GCTGCAAACG
CTGGAGAGCA AACCCCTGCT TGTTGTTTTT TGGGGCGTGT GGGCCGTTCT GGCCATACAG
GGATTCCGCT ATAATTTCTC TCTCCTGCCG GTTATCGGTG TGTTGACCAA CCTTTACCTA
ATGACCGAAC TGGGCGCCAG CAACTGGCAG ATTTTCGGGA TCTGGTTGCT GATCGGGTTG
GTTATCTACT TCTCGTACGG GTTTAGAAAG AGCAAGCTGG GCAGCCGGGA GGCCGCTTCG
GTCTAA
 
Protein sequence
MSLFRKKTVT QILSDASEGE SSKLVKTLGV RDLTSFGIAA IIGAGIFSTI GLASYNGGPA 
VSLLFVFTAI ACVFTALSYA QFASTVPVSG SAYTYAYVAF GEIFAWVIGW ALILEYAVSN
MVVAISWSEY FTSMLSGFGI TFPKYFATDY GSASRAFELV QQTKQAGTAL TTLPENTRLL
ADAYANAPVV GDLHIIANLP AGAITALITA LVYIGIKESR TASNILVVLK LGVIALVIGV
GAFYVKPANW SPFAPNGISG VLSGVASVFF AFIGFDSIST TAEECKNPQR DLPRAMLYCL
GICTVLYVLI TLVLTGMVNY KELGVSDPLA YVFQKVNLDF VAGVISVSAV VAITSALLVY
QLGQPRIWMT MSRDGLLWKR FSRIHPVYKT PSFATIVTGF LVAIPSLFMD LKFFVDLTSV
GTFFAFILVC AGILYLDAKG LTAQSKFKVP YINGKYIIGV VLLAVLAYAL TRPDVNVLQT
LESKPLLVVF WGVWAVLAIQ GFRYNFSLLP VIGVLTNLYL MTELGASNWQ IFGIWLLIGL
VIYFSYGFRK SKLGSREAAS V