Gene Slin_3406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3406 
Symbol 
ID8727159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4121936 
End bp4122670 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content56% 
IMG OID 
Productpseudouridine synthase 
Protein accessionYP_003388213 
Protein GI284038283 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0321433 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTAG TAACAAATAC AACGCAACCC CTCTCTATAC TGTATCAGGA TACGGAACTG 
GTTGCCATTA ATAAACCGCA TGGCCTGCTC GTTCACCGGT CGATGATCGC CAGCGACGCC
AGCGAATTTG CCGTTCAGCT CCTCCGCGAC CAGTTAGGGC AGCGGGTGTA CCCCGTGCAC
CGGCTCGACC GAAAAACGGC GGGCGTCCTC CTCTTCGCCC TCTCCGAATC CATGAACGCC
ATTATGCAGC AACAGTTTAT GGAAGGGGCC GTCCAAAAAA CCTACCTGGC TATTGTGCGC
GGCTACACCC CGGATGAGCT GACGATTGAC TATCCCCTCT GCAAGGACGA TGGCAATGGT
GCGGTGGGCG TACTTCAGGA GGCCGTTACG CACCTGAAAA CCCTTCGGCA AACGGAAATT
CCGGTAGCGT TTGGCAAACA CCCAACGTCT CGCTATTCGC TGGTGGAATT AACGCCCACC
ACCGGCCGGA TGCACCAGTT GCGCAGGCAC ATGGCCCATA TCCTCCACCC CATCATCGGC
GACCGGCCGC ACGGCTGCAA CAAACAGAAT AAGCTATTCA AGGAGCATTT CGAGATGAAC
ACCATGCTGC TCCACGCGCA GAGAATCGAG TTCACGCATC CTGTTACGCA AGAAACGACA
ACGATAGCAG CACCGTTTCA AGCGGAGTTT AGGCGGATGT TGGGGGTGTT GTTTGGGGTG
GGAGATTTAA AGTAG
 
Protein sequence
MDLVTNTTQP LSILYQDTEL VAINKPHGLL VHRSMIASDA SEFAVQLLRD QLGQRVYPVH 
RLDRKTAGVL LFALSESMNA IMQQQFMEGA VQKTYLAIVR GYTPDELTID YPLCKDDGNG
AVGVLQEAVT HLKTLRQTEI PVAFGKHPTS RYSLVELTPT TGRMHQLRRH MAHILHPIIG
DRPHGCNKQN KLFKEHFEMN TMLLHAQRIE FTHPVTQETT TIAAPFQAEF RRMLGVLFGV
GDLK