Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_3406 |
Symbol | |
ID | 8727159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 4121936 |
End bp | 4122670 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | pseudouridine synthase |
Protein accession | YP_003388213 |
Protein GI | 284038283 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0321433 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCTAG TAACAAATAC AACGCAACCC CTCTCTATAC TGTATCAGGA TACGGAACTG GTTGCCATTA ATAAACCGCA TGGCCTGCTC GTTCACCGGT CGATGATCGC CAGCGACGCC AGCGAATTTG CCGTTCAGCT CCTCCGCGAC CAGTTAGGGC AGCGGGTGTA CCCCGTGCAC CGGCTCGACC GAAAAACGGC GGGCGTCCTC CTCTTCGCCC TCTCCGAATC CATGAACGCC ATTATGCAGC AACAGTTTAT GGAAGGGGCC GTCCAAAAAA CCTACCTGGC TATTGTGCGC GGCTACACCC CGGATGAGCT GACGATTGAC TATCCCCTCT GCAAGGACGA TGGCAATGGT GCGGTGGGCG TACTTCAGGA GGCCGTTACG CACCTGAAAA CCCTTCGGCA AACGGAAATT CCGGTAGCGT TTGGCAAACA CCCAACGTCT CGCTATTCGC TGGTGGAATT AACGCCCACC ACCGGCCGGA TGCACCAGTT GCGCAGGCAC ATGGCCCATA TCCTCCACCC CATCATCGGC GACCGGCCGC ACGGCTGCAA CAAACAGAAT AAGCTATTCA AGGAGCATTT CGAGATGAAC ACCATGCTGC TCCACGCGCA GAGAATCGAG TTCACGCATC CTGTTACGCA AGAAACGACA ACGATAGCAG CACCGTTTCA AGCGGAGTTT AGGCGGATGT TGGGGGTGTT GTTTGGGGTG GGAGATTTAA AGTAG
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Protein sequence | MDLVTNTTQP LSILYQDTEL VAINKPHGLL VHRSMIASDA SEFAVQLLRD QLGQRVYPVH RLDRKTAGVL LFALSESMNA IMQQQFMEGA VQKTYLAIVR GYTPDELTID YPLCKDDGNG AVGVLQEAVT HLKTLRQTEI PVAFGKHPTS RYSLVELTPT TGRMHQLRRH MAHILHPIIG DRPHGCNKQN KLFKEHFEMN TMLLHAQRIE FTHPVTQETT TIAAPFQAEF RRMLGVLFGV GDLK
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