Gene Slin_3390 details

Gene Information

• Locus tag: Slin_3390
• ID: 8727143
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 4094240
• End bp: 4097692
• Gene Length: 3453 bp
• Protein Length: 1150 aa
• Translation table: 11
• GC content: 56%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003388197
• Protein GI: 284038267

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.532087
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.341167
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAAACA AGTATCTTCT CCTTTCTATG CTTATGGGCG GAGTCTACAC CCTGCCGCAA 
CCCAGCGTTG CGCAGGTACT GACACGCGCC CAGCCAGCCT ACGAAAGCAA CGCCCGAGGG 
CAACAAGCTG AGGCACCGGC TGGTCAGCAC AGCCGCCGGA GCCGTTCGCT CAAAAAAGCC 
CTGTCTGAAC TCGAACGACG CTTCAACGTC AACTTCGCCT ATGATGAACA AGTCGTGGCC 
GGTCGGCAGA CCGACACCGA CCTGGAAGGC CTCTCGCTCG AACAGGCGCT CAATCAACTG 
ATCGAATCGC AGGGGCTGCG CTACCGAAAA GTGAACGCCA ACCTGTTTGC CATTCAGGCG 
GCACCCGCCA AAAGAGTGGG CATGGCCCTG CCTGCCGAAA GCCCCGCTCC TGCGCTGGCA 
ACCGTTAGTA ACATACCGAC CGGCGTAACG GAAGCCCCAC AGCTTAAGCG CATCACGGGG 
CAAATCACCG ACGAAAACAA CCAGGGATTG CCCGGCGCCA ACGTCATTGA AAAAGGAACG 
ACGACAGGTG CCACAACCGA TGCCAACGGC AATTTTGTGC TGAATGTCAG CGACAATGCC 
ACGACGCTAA CGATTTCCAG CGTGGGCTAC GCCAGTCAGG ATGTAGCGAT CGGCAACAAC 
ACGGTCGTGA ACGTTAAACT CGTTCCCGAC GACAGAACTC TGAATGAGGT AGTCGTGATC 
GGTTACCAGA CTGTTCGTAA GCGGGACGTA ACCGGTGCCA ATGACGTGAT CAGCCCCGCG 
CAGGCCAACA AAGTAACGGC CAACTCGCTG GCGGAATCCA TTCAGGGGCT ATCGCCGGGG 
GTTACGGTGC GAAACACGGG TGTACCAGGA CAGCAGGCGT CGATTCAGAT TCGCGGGGTG 
GCCAGCTTCC TCAATACCGA CCCGCTGTAC ATCATCGACG GGATGATTGC CGATGCCAAC 
CCAACCATCA ACAACGACGA TATTGAGTCC ATTCAGGTGT TGAAGGATGC CTCGGCTGCG 
GCCATTTACG GGTCGAGGGC GGCCAATGGT GTTATCATCA TCACCACCAA ACAAGGCAAA 
GAAGGCCCCA TCCGGGTAGG TTTTTCGGCC AAATACGGGA TACAGCAGGT GTATAAGCGC 
TGGGATGTGA TGGACGCGGC AAATTTTGCG GCTACCCAAC GGACGCAATA CCAGAACGCC 
GGACAAACAC CCCCGTCGAG TGTGGCTACC GGTACGTTCA ATCCGAACAT CAACACCGAC 
TGGCAGGATC AGGTACTGCA AACGGGTAAT CTTCAGGATT ACAACCTGAC ACTGTCGGGT 
GGTACCAAAA CCGGTACGTA TCTGATTTCA GGCAGTTATT TCAGCAACAA AGGCTACGTA 
ATTGGCAGCG GCTTCGACCG GGCCAGTTTG CGCATCAACA CCAAAAGTCA GCTTGGACGC 
TTCACGTTTG GCGAAAACGC CCTGCTGACG AACTCAAATA TTCAGAATTT TCCGGCAGGC 
AACCCTATTT ACGACATGGC CGGTATGCTG CCCGTTATTC CGGTGCAGGA CCCCAGTTAT 
ATCGACGCCA GCAACCCGGG GGGCTATGGC CTTGGCCGCA ATCCGGATGC CGTTACCTAC 
GCCTTCAACC CGGTAGCAGT TCGTAATCTG GCCAGCAACA AAAGCAATTT CGCCAAGCTG 
GTCGGCAACG CGTACCTCGA TGTAAAACTG ACCGACTGGC TGACCTACCG TGCCAACGCG 
GGACTGGAGG TGAGTTTCGA TTACACCCAG AACCTGCGTC GGCTGGGCAT CTACCAATAC 
AGTGCCTCGC CGGTGCCCAG TTCGGTTGGC GAAGATCGGT CGCGTTACCT CAGTATGCTG 
TTCGAGCACA CGCTGAACTT CAATAAAGTG TTCGGTATGC ACAACATCAA CGGTGTGGTG 
GGTATCAGCC AGCAAACGAC CCGGCGCGAC ATCACGTCCG GCTCGCGCAC CAATCTGGGC 
TTTGCGGGTG GTCAGTATTT CAATACCATC AATGCCGCCA CGGGGATTTC CAACTCGGCT 
GGCGGTACGC CCGACGATTA CCGGATTCTG GGGTACATTG GCCGGGTCAA CTATACCTAT 
AACGACCGTT ATCTGCTAAC GCTGACTGGC CGGGTCGATC AGGACTCACG CTTCGGGGCA 
AACTACCGAA CGGGTTTCTT CCCGTCGGTG GCCGCAGCCT GGCGCATTAG CGAGGAAAAA 
TTCTTTAACG TCGACTGGAT TACTGACCTG AAGCTGAATG CCTCTTATGG TAAGCTGGGT 
ATCGTGGTGC CCACGCTGGG CTCGTTCCCC TATACGGCTT TCATCAACAA CAATCCGAGA 
ACTATTTTCG GAGTCGACCA GACACCCTTC GTAGGAGCCT ATCAGGCGCA GCTGGCCAAT 
CCCGACCTGC GTTGGGAAGA GCGAATCCAG CAGAACTACG GCGTGTCGGC AAGTTTTCTG 
AGAAATCGGA TCACGACGGA GATCAACATC TATAACTCAC TCTCGAACGA TGCGATTCTG 
AACCTGGCCG TGCCGGGTTA TCTGGGTAAC CTGCGCGGTA ATCCATACGT GAATACGGCT 
TCTATCCGCA ACCGGGGCGT CGAGTTTTCG GCCACTTACC GCAACAATGA GCATGCCCTT 
AAATGGGATG TATCCGGCAA CTTTACGACC ATCAAAAACC GGGTTGAAAA CGTAGGTAAC 
CAGGGGCAGA ACATCAACTA CATTCAGAGC GGCAACACAC GCTCGCAGGT TGGTCAGGCC 
GTTGGGCAGT GGTACGTGCT GAAAACGGCG GGCCTCTTCC AGAATCAGGA GGAGATCAAT 
AATTACAAAG GAGCCAACGG AAACCTCATT CAGCCGAATG CCAAACCGGG CGATATTAAG 
TATGTCGATA CCAACGGCGA CGGGCAGATC ACCCAGAACG ACGACCGTCA GTTTGTGGGT 
TCGCCCTGGC CCAAGTTACA GGCGGGCGCA CAGGCCAATG CCTCCTACGG GCAGTTTTCG 
CTCAATGTGC AGTTGACCGG CGTGTTTGGC TACACCGTCT ACAACGACGT ACGGCGTGGA 
CTGGACAGCT ACCAGCTGAC CAACTTCCGC ACCAACATCA GTCCGTGGAC GACGACCAAC 
ACCAGCACAA CCGACCCTCG TCTGGGCCTG GAAAGTGGCG ATCAGGGGAT TATCTCGAAT 
AACTTCGGAT ATACCGACCG CTGGCTTGAA AATGCCTCCT ACGTTCGGGT ACGCAACGTC 
GAGATTGGCT ACACGCTGCC GAAGAACCTG CTCAACACAC TTAAAATCCG CAATGCCCGT 
GTGTATGTGA GTGGTCAGAA CCTGTTCACC ATCACCAAAT ACACCGGCCT CGACCCCGAC 
GTTACGGGTG CAAACATTCA GGAGCGGGGC GTTGATCTTG GCCACTGGCC GTCACCCCGC 
GTTGTATCCG TTGGTGTCAA CTGCGATTTC TAA 

 

Protein sequence

MKNKYLLLSM LMGGVYTLPQ PSVAQVLTRA QPAYESNARG QQAEAPAGQH SRRSRSLKKA 
LSELERRFNV NFAYDEQVVA GRQTDTDLEG LSLEQALNQL IESQGLRYRK VNANLFAIQA 
APAKRVGMAL PAESPAPALA TVSNIPTGVT EAPQLKRITG QITDENNQGL PGANVIEKGT 
TTGATTDANG NFVLNVSDNA TTLTISSVGY ASQDVAIGNN TVVNVKLVPD DRTLNEVVVI 
GYQTVRKRDV TGANDVISPA QANKVTANSL AESIQGLSPG VTVRNTGVPG QQASIQIRGV 
ASFLNTDPLY IIDGMIADAN PTINNDDIES IQVLKDASAA AIYGSRAANG VIIITTKQGK 
EGPIRVGFSA KYGIQQVYKR WDVMDAANFA ATQRTQYQNA GQTPPSSVAT GTFNPNINTD 
WQDQVLQTGN LQDYNLTLSG GTKTGTYLIS GSYFSNKGYV IGSGFDRASL RINTKSQLGR 
FTFGENALLT NSNIQNFPAG NPIYDMAGML PVIPVQDPSY IDASNPGGYG LGRNPDAVTY 
AFNPVAVRNL ASNKSNFAKL VGNAYLDVKL TDWLTYRANA GLEVSFDYTQ NLRRLGIYQY 
SASPVPSSVG EDRSRYLSML FEHTLNFNKV FGMHNINGVV GISQQTTRRD ITSGSRTNLG 
FAGGQYFNTI NAATGISNSA GGTPDDYRIL GYIGRVNYTY NDRYLLTLTG RVDQDSRFGA 
NYRTGFFPSV AAAWRISEEK FFNVDWITDL KLNASYGKLG IVVPTLGSFP YTAFINNNPR 
TIFGVDQTPF VGAYQAQLAN PDLRWEERIQ QNYGVSASFL RNRITTEINI YNSLSNDAIL 
NLAVPGYLGN LRGNPYVNTA SIRNRGVEFS ATYRNNEHAL KWDVSGNFTT IKNRVENVGN 
QGQNINYIQS GNTRSQVGQA VGQWYVLKTA GLFQNQEEIN NYKGANGNLI QPNAKPGDIK 
YVDTNGDGQI TQNDDRQFVG SPWPKLQAGA QANASYGQFS LNVQLTGVFG YTVYNDVRRG 
LDSYQLTNFR TNISPWTTTN TSTTDPRLGL ESGDQGIISN NFGYTDRWLE NASYVRVRNV 
EIGYTLPKNL LNTLKIRNAR VYVSGQNLFT ITKYTGLDPD VTGANIQERG VDLGHWPSPR 
VVSVGVNCDF