| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3345 |
|---|
| Symbol | |
|---|
| ID | 8727098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 4044737 |
|---|
| End bp | 4046317 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | Amidase |
|---|
| Protein accession | YP_003388154 |
|---|
| Protein GI | 284038224 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0644396 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT ACGTAGTTTC TCTTTTTCTT ATTTATAGTG TTGTGATTGC GTCGGTTTGT
GGGCAGTCTT TCAATGCCAA AACCATCCCC GAAGCCACCG TCACCAGCTT ACATGCCGCC
ATGCAGGCCG GTAAACTGAC CGCCGTTCAA CTGCTACAAC TGTATCTGGA CCGGATTGAG
GCCTACGACA AACAAGGGCC TTACCTGAAC GCCATCATCA TGGTAAACCC TAAAGCCCTG
GCCGAAGCCC GGCGGCTGGA TTCACTCTAC AAAGCAACTG GCAAGATGGT TGGCCCGCTG
CACGGCATTC CCGTAATCGT GAAAGATAAT TACGACACCT TCGACATGCC CACTACCAAC
GGCACACTGG CCATGAAGAA GTCCATTCCA CCCGATGATG CCTTTGTGGT TCGCAAAATT
CGGGAGGCCG GGGCCATCAT TATTGCCAAG TCGAATCTGG CGGAGTTTGC CTACTCGGGG
CAGTTTTCGG TAAGCTCTAT TTTGCCCGGC TATTCCCGAA ACCCCTACGA CACCAAACGG
ACAACGGCCG GGTCGAGTGG GGGCACGGCG GCTGCGGTTA CCGCTAATTT CGGCGCTATC
GGCCTGGGAA CAGATACGGG CAGCTCCATT CGCGGACCCG CGTCGCACCA GAGTCTGGTT
GGTTTCCGGC CAACGCTGGG TCTGGTTAGC CGGGATGGCA TTGCACCCCT GGCCATGACC
AACGATACCG GCGGACCCAT CTGCCGGACG GTGGAAGATG CCGTTCGGGT GCTCGATGTA
ATTGCTGGTT ACGACAAAGC GGATACCGTA ACGAAGCGCA GTGCGGGTAA AATTCCGCAA
ACCTACCGGC AGTTTCTGGA TAAAGATGGG CTGAAAGGAG CGCGGATTGG GGTGTTTCGC
CAGATGGTCA TGCCCAAGAA TTCAGACCCG CAGGTGTACG CTCTTTTCAA CAAAGCCCTT
GACGAACTTC GGGCTGCGGG GGCCATTGTG ATCGATTCAG TTCGGGTGCC CCAACTCGAT
ACGATCAACA AATCGTTCGA TACCATTCCG CAATTACGGC GCGACTTCAA TTTGTATCTG
GCCAGTCTGG GACCCAATGC ACCGCATAAA ACGCTGGAGT CTATTGTTAA ATCACGTCAG
TTTCACCCCT ATCTGGAAAA AGGGCTGCTC GATGCCATCG CCGATACGCT GGCACCGGAA
GCGCACAAAG GCTGGGGGAA GAATCTGGCC TTGCGGGAGC GGCTCCGTCA GTTGCTGCTT
CGGGCTATGG ATTCGACGCA AGTCGATGCA CTCGTGTATC CGTCGTTCAG CTACCCGCCC
CGGCTCATCG GCGATCTGAA TACGCCCTCG GGAACAAATA ACAATGCCTT GTCGCCACCG
ACGGGGTTTC CGGCTTTTTC GGTACCGATG GGATTTACGT ATGATGTACT GCCTGCCGGG
TTGCAGTTTT TCGGCAGACC GTTTAGCGAA CCAACCCTGA TCAAACTGGC CTATGCCTAT
GAGCAGGCCA CCCACCACCG CCGACCGCCG GAGAGTACGC CCGCGCTTCC GAAGAAAAAA
CGCAAAACGA TGGTGCAGTA G
|
|---|
| Protein sequence | MKKYVVSLFL IYSVVIASVC GQSFNAKTIP EATVTSLHAA MQAGKLTAVQ LLQLYLDRIE
AYDKQGPYLN AIIMVNPKAL AEARRLDSLY KATGKMVGPL HGIPVIVKDN YDTFDMPTTN
GTLAMKKSIP PDDAFVVRKI REAGAIIIAK SNLAEFAYSG QFSVSSILPG YSRNPYDTKR
TTAGSSGGTA AAVTANFGAI GLGTDTGSSI RGPASHQSLV GFRPTLGLVS RDGIAPLAMT
NDTGGPICRT VEDAVRVLDV IAGYDKADTV TKRSAGKIPQ TYRQFLDKDG LKGARIGVFR
QMVMPKNSDP QVYALFNKAL DELRAAGAIV IDSVRVPQLD TINKSFDTIP QLRRDFNLYL
ASLGPNAPHK TLESIVKSRQ FHPYLEKGLL DAIADTLAPE AHKGWGKNLA LRERLRQLLL
RAMDSTQVDA LVYPSFSYPP RLIGDLNTPS GTNNNALSPP TGFPAFSVPM GFTYDVLPAG
LQFFGRPFSE PTLIKLAYAY EQATHHRRPP ESTPALPKKK RKTMVQ
|
|---|
| |