Gene Slin_3340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3340 
Symbol 
ID8727093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4039282 
End bp4040073 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content49% 
IMG OID 
Producthypothetical protein 
Protein accessionYP_003388149 
Protein GI284038219 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.205773 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.325708 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAGG ATATTGACAA GTTACTGGAA CGCTATTATG AGGGAGAAAC ATCGCTGGAT 
GAAGAAAGGC AGCTACGGCA GTTCTTCCAG CAGGAATCCA TTCCGGTGCA CCTGCAACAC
CATTCAGCCC AGTTTCGCTA TTTTGCTGAT GCTCATAACG AACATCCCTC GCTAAAGTTC
AGCACCGCAT TAGCCAGCAA ACTGGATCCG TTGACAAGCA ATCCGTTCGG CATTTTGAAA
AACTGGAGTG TACGGATAGC GGCCAGTATT GCGTTGCTAC TTATTGGCTT TGCCGGAGGA
CTGCTTTATA CCCATTGGCG ATCTGCCGAT GCCAGCACCC AGTTGGCCAA TTCGACAGCC
AGTGCCACCC CTGAAGTAGC GATCAAAAAA GTGCTGGCGT TCGAGTCGAA TCCAAAAACA
TCAGCCAGTG AGCGTATTCA GGCAATCAAC CAGAGTTTTG AGCTTACCCA GGCTGATCGG
GATATAACCC AGCTTCTGAT CAATACCCTG AATTTTGATC CGAACGTAAA CGTCCGGTTG
GCGGCCTGTC AGGCGCTGGT CCGCTTTGAA AACGAACCTG TGGTACGTAA TGCGCTAATC
CAGTCTCTTC AGATTCAAAC GGACCCGAAT GTTCAGATAA CACTCATTGA CGTACTCGTT
GCCATTAAAG AAAAGCGGGC CGTTACTGAA ATACAACGTC TTGCCCAGAA TCAGCAGGTA
CTTGAAGCCG TACGTATCAA AGCAGCCGAA GGCATTACCC GGTTGGATAA TACCTCACAT
TCACCTTCAT AA
 
Protein sequence
MKQDIDKLLE RYYEGETSLD EERQLRQFFQ QESIPVHLQH HSAQFRYFAD AHNEHPSLKF 
STALASKLDP LTSNPFGILK NWSVRIAASI ALLLIGFAGG LLYTHWRSAD ASTQLANSTA
SATPEVAIKK VLAFESNPKT SASERIQAIN QSFELTQADR DITQLLINTL NFDPNVNVRL
AACQALVRFE NEPVVRNALI QSLQIQTDPN VQITLIDVLV AIKEKRAVTE IQRLAQNQQV
LEAVRIKAAE GITRLDNTSH SPS