Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_3170 |
Symbol | |
ID | 8726923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 3841248 |
End bp | 3843731 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | |
Product | TonB-dependent receptor |
Protein accession | YP_003387980 |
Protein GI | 284038050 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.118965 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACGA TTTTACCAAT ACTCTTTTTA AGCCTATTTG CTCTATCAAC ATCATTTGGG CAAGTATTAA CACGGGGAAC AGTAACCGGG CAAGTGGGTA CTGTAGCAGG TAAGCCACTT GAGTTTACCA CCATGATGCT CCTGAAAGCA AAAGATTCTA CACTGGTAAA AGGGGCCATC AGTGATGCCG AAGGAAAATA CGCCTTTGAA AATGTAGGTG CCGGAAACTA CCGGGTGGCT GCCCAGCAGA TCGGTTATAG CAAAACGTAT AGCGCACCGT TCTCCATAAA TGAAGCAAAT CCAGCCGCCG AACTGCCAGC CCTGGCTATG GCCGATGAAA CGAAAAGCCT GACCGAAGTG AAAGTCATTG CCCAAAAGCC ATTCATCGAG CAGCAGGTCG ACCGAACCGT CATGAATGTA GAGAACAGCA TTGTCGCCAG CGGCAACACG GCGCTGGAGG TTCTCGAAAA AGCCCCCGGT GTCACCATCG ACCGGCAGAA CGACCAGATT CAGCTGAAGG GTAAAGCCGG GGTGATCGTT TACATCGACG GCAAACAGAC CTATCTCTCG CAGCAGGAAG TATCGAACCT GTTGAAAAAT ACACCCAGCG ACAACATTGC GTCAATTGAA ATTATTACCA ATCCTGGCTC TAAGTACGAC GCTGCGGGTA ATTCGGGGAT CATCAACATC AAGATGAAGA AGAATAAGAA TTTCGGTACC AACGGTACGT TTATCGTCGG TACGGGCTAC GGCTGGGTGA ACAATTTGCA GGGAGCCCGC GACGATCTGC CGAAATTCAA CACCTCCCTG AACCTCAATC ACCGCGAGGG TAAATTGAAT GTATTTGGCA ACTACAGCTA CGTGAACCGG GAAAGTGCCC AAACCAACGA AATCAACCGG GCTATTCCGT ACAACGGTAA GATCACGTAT TTCGATCAGT ATTCCTTCCG GCCAAATCAG TTTACGGGTC ATTCGTACAA AGCCGGGCTG GACTATTATA TCAACAAGAA AAGTACTGTG GGTGTGTTGC TCAACGGTTT CTCGAACGAC TGGCGGTCGG GTGGGCAGAA TAATACGCTT ATCAGCGATG AAAATCGCCG GTTAACCAGC CGACCCACGA CCAAGACAGA TGCTCGTCAG TTTATGTCGA ACGTAACCGG CAACGTCAAC TATAAGTACG ATTTTGATGG CAAAGGCCGC GAGTGGACCG TCGATGCCGA CTACGTTCAT TACGGTGGAA AAAATAATAA CAACCTAAGC ACGGTTTACT ACAACGCGGA TAATTCGCTG ACCCGCCCCA ACCAGGATGT ACGTAATAAT ATGCCATCTG AGATCAACAT CATGGCGTTC AAGACGGATT ATGTACACCC GCTGAAAAAT GGCGGCAAAG TAGAAGCCGG GTTGAAAAGC AGCTTTGTCG ATGCAGACAA TAATACCATC TACGATACAC TACAGCAGGA AACAAAACAG TGGCTGTTCG ATGCCAGTCG GTCCAATCAG TTCAAATACA ACGAGAATAT AAACGCGGCT TACGTTAATT ATGCCGGTAA ATTCGGGAAG CTAAAAGTAC AGACGGGGCT TCGTGCGGAG CATACGCACT CAACGGGCAC GTCGGTCACG CTTAACCAGA CGGTGGATCG CAACTACCTC AACCTGTTCC CAACGGTATT CCTATCTCGT CAACTGGATA CGAATAACGT GCTGAATATG TCGTACAGCC GCCGGATCGA CCGTCCTGAC TACCAGAACC TGAATCCGTT CGTGTTTTAT CTGGACCCCT ACACCTATCA GCAGGGTAAT CCGTTCCTGC GGCCACAGTA CACCAATTCG GTTGAGCTGA CGCACGTATA TAAAGGTGCG ATTTCAACGA CACTCGGTTT CAGCCGCACT ACGGATTTCA TCAACCAGGA AACGCCCCGC CAGATTGCCG CTCAGAACAT CACCTACGTA ACACCCGAAA ACCTGGGTCA TCTGGACAAC CTGAATTTGA ATGTCAGTTT CCCCGTGTCG GTTGCCAAAT GGTGGCGGAT GCAGAACAAC GTGAACACGT ATTATCAGAA CTACCAGACT TTTTATTCCG GGACACCGTA TCAGGTGAAG CTGGTGGCCT TCAATCTGTA CACATCAAAC AACTTTACCC TGAGCAAAAC CCTGTCGGCC GAAGTATCGG GCTGGTTTAA TTCAGCATCG CAGTACGGTT TCTACCGGGC TCAGCCAATG GGCGGGTTTA GTATTGGGGT GCAGAAAAAA GTAATGGAAG GCAAAGGAAA TATCAAGCTG AACGTTAACG ACCCTTTCTG GCTGAATCAG TTCCGGGGAC GGGCAATGGT TCAGGATATC GATTTCCGGG TTGGATCGCG CTGGGAGAGC CGCCAGATCA GACTTACGTT CACCTACCGC TTTGGTAACC AGAACGTAAA AGGAGCCCGC GACCGGAATT CAGCCACATC GGCCGAGCAA AACCGGGTAA AAGCAGGAAA CTAG
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Protein sequence | MKTILPILFL SLFALSTSFG QVLTRGTVTG QVGTVAGKPL EFTTMMLLKA KDSTLVKGAI SDAEGKYAFE NVGAGNYRVA AQQIGYSKTY SAPFSINEAN PAAELPALAM ADETKSLTEV KVIAQKPFIE QQVDRTVMNV ENSIVASGNT ALEVLEKAPG VTIDRQNDQI QLKGKAGVIV YIDGKQTYLS QQEVSNLLKN TPSDNIASIE IITNPGSKYD AAGNSGIINI KMKKNKNFGT NGTFIVGTGY GWVNNLQGAR DDLPKFNTSL NLNHREGKLN VFGNYSYVNR ESAQTNEINR AIPYNGKITY FDQYSFRPNQ FTGHSYKAGL DYYINKKSTV GVLLNGFSND WRSGGQNNTL ISDENRRLTS RPTTKTDARQ FMSNVTGNVN YKYDFDGKGR EWTVDADYVH YGGKNNNNLS TVYYNADNSL TRPNQDVRNN MPSEINIMAF KTDYVHPLKN GGKVEAGLKS SFVDADNNTI YDTLQQETKQ WLFDASRSNQ FKYNENINAA YVNYAGKFGK LKVQTGLRAE HTHSTGTSVT LNQTVDRNYL NLFPTVFLSR QLDTNNVLNM SYSRRIDRPD YQNLNPFVFY LDPYTYQQGN PFLRPQYTNS VELTHVYKGA ISTTLGFSRT TDFINQETPR QIAAQNITYV TPENLGHLDN LNLNVSFPVS VAKWWRMQNN VNTYYQNYQT FYSGTPYQVK LVAFNLYTSN NFTLSKTLSA EVSGWFNSAS QYGFYRAQPM GGFSIGVQKK VMEGKGNIKL NVNDPFWLNQ FRGRAMVQDI DFRVGSRWES RQIRLTFTYR FGNQNVKGAR DRNSATSAEQ NRVKAGN
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