Gene Slin_3170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3170 
Symbol 
ID8726923 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp3841248 
End bp3843731 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content49% 
IMG OID 
ProductTonB-dependent receptor 
Protein accessionYP_003387980 
Protein GI284038050 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.118965 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACGA TTTTACCAAT ACTCTTTTTA AGCCTATTTG CTCTATCAAC ATCATTTGGG 
CAAGTATTAA CACGGGGAAC AGTAACCGGG CAAGTGGGTA CTGTAGCAGG TAAGCCACTT
GAGTTTACCA CCATGATGCT CCTGAAAGCA AAAGATTCTA CACTGGTAAA AGGGGCCATC
AGTGATGCCG AAGGAAAATA CGCCTTTGAA AATGTAGGTG CCGGAAACTA CCGGGTGGCT
GCCCAGCAGA TCGGTTATAG CAAAACGTAT AGCGCACCGT TCTCCATAAA TGAAGCAAAT
CCAGCCGCCG AACTGCCAGC CCTGGCTATG GCCGATGAAA CGAAAAGCCT GACCGAAGTG
AAAGTCATTG CCCAAAAGCC ATTCATCGAG CAGCAGGTCG ACCGAACCGT CATGAATGTA
GAGAACAGCA TTGTCGCCAG CGGCAACACG GCGCTGGAGG TTCTCGAAAA AGCCCCCGGT
GTCACCATCG ACCGGCAGAA CGACCAGATT CAGCTGAAGG GTAAAGCCGG GGTGATCGTT
TACATCGACG GCAAACAGAC CTATCTCTCG CAGCAGGAAG TATCGAACCT GTTGAAAAAT
ACACCCAGCG ACAACATTGC GTCAATTGAA ATTATTACCA ATCCTGGCTC TAAGTACGAC
GCTGCGGGTA ATTCGGGGAT CATCAACATC AAGATGAAGA AGAATAAGAA TTTCGGTACC
AACGGTACGT TTATCGTCGG TACGGGCTAC GGCTGGGTGA ACAATTTGCA GGGAGCCCGC
GACGATCTGC CGAAATTCAA CACCTCCCTG AACCTCAATC ACCGCGAGGG TAAATTGAAT
GTATTTGGCA ACTACAGCTA CGTGAACCGG GAAAGTGCCC AAACCAACGA AATCAACCGG
GCTATTCCGT ACAACGGTAA GATCACGTAT TTCGATCAGT ATTCCTTCCG GCCAAATCAG
TTTACGGGTC ATTCGTACAA AGCCGGGCTG GACTATTATA TCAACAAGAA AAGTACTGTG
GGTGTGTTGC TCAACGGTTT CTCGAACGAC TGGCGGTCGG GTGGGCAGAA TAATACGCTT
ATCAGCGATG AAAATCGCCG GTTAACCAGC CGACCCACGA CCAAGACAGA TGCTCGTCAG
TTTATGTCGA ACGTAACCGG CAACGTCAAC TATAAGTACG ATTTTGATGG CAAAGGCCGC
GAGTGGACCG TCGATGCCGA CTACGTTCAT TACGGTGGAA AAAATAATAA CAACCTAAGC
ACGGTTTACT ACAACGCGGA TAATTCGCTG ACCCGCCCCA ACCAGGATGT ACGTAATAAT
ATGCCATCTG AGATCAACAT CATGGCGTTC AAGACGGATT ATGTACACCC GCTGAAAAAT
GGCGGCAAAG TAGAAGCCGG GTTGAAAAGC AGCTTTGTCG ATGCAGACAA TAATACCATC
TACGATACAC TACAGCAGGA AACAAAACAG TGGCTGTTCG ATGCCAGTCG GTCCAATCAG
TTCAAATACA ACGAGAATAT AAACGCGGCT TACGTTAATT ATGCCGGTAA ATTCGGGAAG
CTAAAAGTAC AGACGGGGCT TCGTGCGGAG CATACGCACT CAACGGGCAC GTCGGTCACG
CTTAACCAGA CGGTGGATCG CAACTACCTC AACCTGTTCC CAACGGTATT CCTATCTCGT
CAACTGGATA CGAATAACGT GCTGAATATG TCGTACAGCC GCCGGATCGA CCGTCCTGAC
TACCAGAACC TGAATCCGTT CGTGTTTTAT CTGGACCCCT ACACCTATCA GCAGGGTAAT
CCGTTCCTGC GGCCACAGTA CACCAATTCG GTTGAGCTGA CGCACGTATA TAAAGGTGCG
ATTTCAACGA CACTCGGTTT CAGCCGCACT ACGGATTTCA TCAACCAGGA AACGCCCCGC
CAGATTGCCG CTCAGAACAT CACCTACGTA ACACCCGAAA ACCTGGGTCA TCTGGACAAC
CTGAATTTGA ATGTCAGTTT CCCCGTGTCG GTTGCCAAAT GGTGGCGGAT GCAGAACAAC
GTGAACACGT ATTATCAGAA CTACCAGACT TTTTATTCCG GGACACCGTA TCAGGTGAAG
CTGGTGGCCT TCAATCTGTA CACATCAAAC AACTTTACCC TGAGCAAAAC CCTGTCGGCC
GAAGTATCGG GCTGGTTTAA TTCAGCATCG CAGTACGGTT TCTACCGGGC TCAGCCAATG
GGCGGGTTTA GTATTGGGGT GCAGAAAAAA GTAATGGAAG GCAAAGGAAA TATCAAGCTG
AACGTTAACG ACCCTTTCTG GCTGAATCAG TTCCGGGGAC GGGCAATGGT TCAGGATATC
GATTTCCGGG TTGGATCGCG CTGGGAGAGC CGCCAGATCA GACTTACGTT CACCTACCGC
TTTGGTAACC AGAACGTAAA AGGAGCCCGC GACCGGAATT CAGCCACATC GGCCGAGCAA
AACCGGGTAA AAGCAGGAAA CTAG
 
Protein sequence
MKTILPILFL SLFALSTSFG QVLTRGTVTG QVGTVAGKPL EFTTMMLLKA KDSTLVKGAI 
SDAEGKYAFE NVGAGNYRVA AQQIGYSKTY SAPFSINEAN PAAELPALAM ADETKSLTEV
KVIAQKPFIE QQVDRTVMNV ENSIVASGNT ALEVLEKAPG VTIDRQNDQI QLKGKAGVIV
YIDGKQTYLS QQEVSNLLKN TPSDNIASIE IITNPGSKYD AAGNSGIINI KMKKNKNFGT
NGTFIVGTGY GWVNNLQGAR DDLPKFNTSL NLNHREGKLN VFGNYSYVNR ESAQTNEINR
AIPYNGKITY FDQYSFRPNQ FTGHSYKAGL DYYINKKSTV GVLLNGFSND WRSGGQNNTL
ISDENRRLTS RPTTKTDARQ FMSNVTGNVN YKYDFDGKGR EWTVDADYVH YGGKNNNNLS
TVYYNADNSL TRPNQDVRNN MPSEINIMAF KTDYVHPLKN GGKVEAGLKS SFVDADNNTI
YDTLQQETKQ WLFDASRSNQ FKYNENINAA YVNYAGKFGK LKVQTGLRAE HTHSTGTSVT
LNQTVDRNYL NLFPTVFLSR QLDTNNVLNM SYSRRIDRPD YQNLNPFVFY LDPYTYQQGN
PFLRPQYTNS VELTHVYKGA ISTTLGFSRT TDFINQETPR QIAAQNITYV TPENLGHLDN
LNLNVSFPVS VAKWWRMQNN VNTYYQNYQT FYSGTPYQVK LVAFNLYTSN NFTLSKTLSA
EVSGWFNSAS QYGFYRAQPM GGFSIGVQKK VMEGKGNIKL NVNDPFWLNQ FRGRAMVQDI
DFRVGSRWES RQIRLTFTYR FGNQNVKGAR DRNSATSAEQ NRVKAGN