| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3125 |
|---|
| Symbol | |
|---|
| ID | 8726878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 3794267 |
|---|
| End bp | 3795754 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003387935 |
|---|
| Protein GI | 284038005 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACGT TTATATGCCG CTTTACCGTT GTTGCAGCAT TTTTCCTCCT GCTCAATCCA
TTTGTGGCTA GAGCGCAGGA TTTTGTCTGG ACACCGGGCT TACAACGAGC CTATAGTGAG
CTTCAAAAAC TAGCGGTACA ACCCGCTCAA CATATACTGG CGGCAGAGTC AGCACAGAAT
GGTGTACGCA TTTTCGTTGA TGATTACGCC GATATGCTTC TGCTCGTCAC TTCGGATGAT
GATCGGCTCT TTGCATCCAT CAGCGACCGG GAAGAAGAGC GGCTCGATGC CCTTAAAAAA
CTCGATGACG CATCCCCCTG GAAACGGGTG CTTCTGGCTG AGGTGCGGCT CCACTGGGCG
TTCGCCAAAT TGAAGTTTGG AAAGGAGATG AGCGCGAGTT GGGATGTCAT TCGGGCTTAT
AAATTACTGG CGGAGAACCA GAAACGATTT CCTGCCTTCG TACCTACTTA CAAATCGCTG
GGAACACTTC ATGTCATGAT TGGTTCTGTG CCAGATAGTT ACAGCTGGGT AGCAAGTCTG
CTGGGTTTAC ATGGAAACAT TCAGCAGGGG CAACAGGAAC TTCAACGCGC CCGGCAAGAC
CCAATCTTTG GGCTCGAAGC CCGGCTGATT GACCTGATGG TACGAGCTTA TGTCCTGACG
TTTTCTGACG CGGACGGGCA AAGCGTACAG CAGTTGGTCA GCGCCCATCC CGATAACCTA
CTGCTGCATT TCTTTGGAGC AACTATTGAA CAAAAGAACG GCCACGGTGA ACAGGCGCTT
ACGTACCTGT CTACCCGGCC GAGTGGTAAA AATTATCTAC CCTTACCCGT TGTCGAAAAT
ATTCTGGGCG ACATCTACCT GCAAAAGGGT GAATACAACA CAGCAACAAC CCATTTTCAG
CAGTTTCTGG CCACCTATAA AGGCCGTAAT TTTCTGAAAG ACTCGTACTA TAAACTCTTT
CTATGCCGCT GGCTGGCGAA CAAACCCGAT CCTGACTCAC GCCCCTTCTT GCAGAACGTA
ATTACTGTTG GTCGAACAAC GGTGGAGTCG GATAAGGCTG CGCAAAAGTT TGCTGAGTCG
TATTTAGCCA AAGGCGTCTC AGCAAACCAG AAAGTACTGA TGCGGGCACG GCTGGCTTCC
GATGGTGGTT TTACGGATAG TGCGCTAGCT TACCTGCGCC CATATTCGGA AGCAAAATTT
TCAACCATCA CCGAGAAAGC CGAATACACA TACCGCATGG GCCGTATTTT TCAACGCCGG
CATGAGCCGG ATGCCGCCAT TCCCTGGCTT ACGCGCGCGC TGGCGCTGAG TGAACCGGAC
CAGCTTTCTT TCGGTGCCAC AGCGGCTCTT CAGTTGGGCT ATATTTACCA GCAAAAAAAC
GACCGCACTC GCGCACGGTC GTTTTTCCAA AAAGCTCTCA GTTTTAAACG CCATGAGTAC
AAAAACAGCG TTGACAATAA AGCGAGGGCG GGATTAAGTG GGTTGTAG
|
|---|
| Protein sequence | MPTFICRFTV VAAFFLLLNP FVARAQDFVW TPGLQRAYSE LQKLAVQPAQ HILAAESAQN
GVRIFVDDYA DMLLLVTSDD DRLFASISDR EEERLDALKK LDDASPWKRV LLAEVRLHWA
FAKLKFGKEM SASWDVIRAY KLLAENQKRF PAFVPTYKSL GTLHVMIGSV PDSYSWVASL
LGLHGNIQQG QQELQRARQD PIFGLEARLI DLMVRAYVLT FSDADGQSVQ QLVSAHPDNL
LLHFFGATIE QKNGHGEQAL TYLSTRPSGK NYLPLPVVEN ILGDIYLQKG EYNTATTHFQ
QFLATYKGRN FLKDSYYKLF LCRWLANKPD PDSRPFLQNV ITVGRTTVES DKAAQKFAES
YLAKGVSANQ KVLMRARLAS DGGFTDSALA YLRPYSEAKF STITEKAEYT YRMGRIFQRR
HEPDAAIPWL TRALALSEPD QLSFGATAAL QLGYIYQQKN DRTRARSFFQ KALSFKRHEY
KNSVDNKARA GLSGL
|
|---|
| |