| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3036 |
|---|
| Symbol | |
|---|
| ID | 8726788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 3680686 |
|---|
| End bp | 3683787 |
|---|
| Gene Length | 3102 bp |
|---|
| Protein Length | 1033 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003387846 |
|---|
| Protein GI | 284037916 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000276569 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.556141 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAA AATTACGTAG AGCCATTCCC GGGTTATTAC TTTTTCTGGG CATATGGATT
TCCGCTGTTG CATCACCTGT ATTTGCTGTC GACAGTGAAA TAACGGGCCG GGTTTCAGAC
GAGAAAGGAA ATGACGTGGT TGGTGCCTCT GTCACCATCA AAGGTACCAA TCGGGGTACT
AATACAGATG CCAGTGGCAA GTATCGAATT GTCGTTCCAA ATGGAAGTGC CGTACTTGTA
TTTTCATACA TTGGCTACAC CAAGCAGGAG GTTACCGTTG GTAACCGCTC CGTTATTGAC
GTGAAGCTGG AGCCAGGTAG CGCTGTACTC GACGAGGTCG TGGTAACGGC TTTAGGGATA
TCGAAAGAAG CCCGTAAGGT TGGTTATGCG GTTACGACGG TTAGTAGTGA AGCATTCACA
AAAGCTCGCG AAACCAACGT TGGTAATTCG CTGGTTGGCC GGGTTGCCGG TTTGACCGTA
AAGGGTACCA ACGGTGGCCC CGGCAGCACA TCTAAAATCC TGTTGCGGGG TATGCCCAGT
ATTAATTCGG GTGGTGCGCC ATTGATCGTT ATTAATGGTG TACCCATGGA CAATACCCAA
CGGGGTAGCG CCGGCGAGTG GGGTGGTGCC GATGGTGGAG ACGGTATCGG TAACCTGAAC
CCGGATGACA TCGAAACAAT GACGGTGCTG AAGGGACAAT CTGCATCGGC CCTGTACGGT
GCCCGATCAT CTAATGGTGT TATTCTGATT ACAACCAAAC GCGGTAAGAA AGGTGATTAT
GCCATTGAAT ACAACGCAAA CCTGACAGCT GATAGTCCGA TTAACTTTAC TGATTTTCAG
TACGAGTACG GACAGGGAAC AGGTGGCGTA AAACCCACTA CCATTGCCGC TGCTCAGCAA
ACGGGTCGTC AGAGCTGGGG TGCTAAACTG GATGGCTCGC AAATCACCCA GTTTGATGGT
AAGCAATATG CTTACTCGGC TCAAAAAGAT AACATCAAAA ATTTCTACCG GACAGGCACC
AACTTCACCA ATACAGTTTC GGTCACTAAA GGGGGGGATA ACGGGTCATT CCGTTTGTCA
TTGTCTAACC TCGATACCAA GTCGATTCTA CCGAACAGTG GTCTGGGCCG TAAAACGTTT
AACCTGACGG CCGACCAGAA CATCACCTCG AAACTAAGCG TGAGCCTGCT GGCAAACTAC
ATCGACGAAA AGATTACGGC AAAGCCGCAG TTGAGTGATG GTCCAATGAA TGCCAACAAT
GGTTTATTCC TGGCAACGAA CATCGATCAG CGAATTCTGG CCCCGGGTTA TAATACCACA
ACCGGACGTG AGATTATTTT TAGTGATGAT GAGTACGTAA CGAACCCGTA CTTCGTAACC
AATCAGTACG TGAACGACGT AAGCCGCAAG CGATTGATTT CGATGATTGC GACCAAGTAT
CAGTTTGCCG ACTGGATTTA CGCGCAGGGA CGGGTTGGAT ACGATAACGG CAATGACCGG
ATTTTCCGGG TTACACCCTA CGGAACGGCT TATTCGCAGG ATGCCAAAGG TGGCCTGGAC
GAGCAGTCGA ACGCCCAAAC GACTGAATTG AACATCGACG GTTTGATTAG TGTTAGTAAG
GCCATTACGC CCGACTTCTC TATTGATGCT ATCGTGGGTG GTAACATCCG CAAAAATAAC
TATGAGAAAA TCGGCATCGG CGGTGGGCCA TTCGTTCTGC CTTACCTCTA TAGCTACAAT
AACGTTGTAA ACTTTAACCG GAGCTATGGC TTTTCCAAGT CTGAAGTTCA GTCGGCTTAT
TATAGCCTCG ACTTTAGTTA TAAAAGCTTC CTGAACATAA GCACAACGGG TCGCTACGAT
GCTTATTCGA AACTGCCCAG TACGGCACGA ACAATTTTTA CGCCGTCTGT AACGGGTGCT
TTCATTTTCT CTGAGTTTGT TAAAACACCC AGCCTGAGCT TTGGTAAACT ACGGGCGTCT
TATGCAGTTA CCAGTGGTGA ACCAGCAGAC GCCTATGGAA CTAGTGTTTA TTACGGGGTA
GGAAGTGCGC TGAATGGTGT TCCTACTGGT AATTTTAGTT CCAGCTTGCC CAACTTGTTC
CTCAAACCCT TTACCAAGAG CGAAGTTGAG GTTGGTTTAG AACTTAAGTT CTTCGGTAAC
CGGTTAGGAT TCGATCTGGC CTATTTTGAT CAGAAAACAC ATAACGAAAT CCTGCCAGCT
AACTACAGCC CGGCAACAGG GTATACGAGT GGGGTAGTGG CTACCGGTTC TACCCAGAAC
CGGGGTCTCG AAGTGCTGGT AACCGGCACG CCGGTGAAAA CGGCTAAATT GGCCTGGAAT
GTTTCGTTTA ACCTGACTTC GGTTAAAAAC AAAATCCTCC AGACCGATGC CAATAACAAT
CCGCTGGGTT TGGGCTCAAA CCGTGCTACA CTGGGGAATG CGACTACTGC GTTTGTTGTG
GGTGAGTCTG GTCCGCAGAT CCGCGCGTAT GATTACAAGT ATGCCTCGAA CGGACAAATC
ATTGTCGATG CATCCGGCCT GCCGGTTCGG GGTAACCTGA TCAATATGGG TACGGTATTA
CCAACGCTCT TCGGTGGTTT AAATAACGAG TTCTCGTTCG GTAATTTCAA CCTGGCGTTC
CTGGTCGATT ACAACTACGG TAACAAGATT CTTTCGGCTA CCGAAAACTA CGCCTACCGC
CGTGGCCTGC ATAAAGCGAC TTTGGTGGGC CGTGAAGGAG GTATCACCAC GGGTGTTGTA
GAGGGCGGTG CTGCCAATAC GGTTAGCGCC ACCGCTCAGA ATTACTACAC GGCACTGGCC
AACAACGTAA CCAAAATCAG TGTGGTCGAT GGCGATTTCA TCAAATTGCG GCAGCTGACA
TTTGGCTACA ACATACCTGC CAGCGTTTTG ACAAAAGTGC CTCTGATTCG TGCGGTTAAT
ATTTCTTTCG TGGCCCGGAA CCTGTTCTAT ATCATGAAGA AAACAACCAA TATTGATCCA
GAAGCTACGT TTGGCGCTAA CCTGCGTTAC GCTGGTATTG AAGGAACGAG CCTTCCATCA
AGTCGTAACT ACGGGGTTAA CCTAAACATC CGGTTCAAGT AA
|
|---|
| Protein sequence | MKSKLRRAIP GLLLFLGIWI SAVASPVFAV DSEITGRVSD EKGNDVVGAS VTIKGTNRGT
NTDASGKYRI VVPNGSAVLV FSYIGYTKQE VTVGNRSVID VKLEPGSAVL DEVVVTALGI
SKEARKVGYA VTTVSSEAFT KARETNVGNS LVGRVAGLTV KGTNGGPGST SKILLRGMPS
INSGGAPLIV INGVPMDNTQ RGSAGEWGGA DGGDGIGNLN PDDIETMTVL KGQSASALYG
ARSSNGVILI TTKRGKKGDY AIEYNANLTA DSPINFTDFQ YEYGQGTGGV KPTTIAAAQQ
TGRQSWGAKL DGSQITQFDG KQYAYSAQKD NIKNFYRTGT NFTNTVSVTK GGDNGSFRLS
LSNLDTKSIL PNSGLGRKTF NLTADQNITS KLSVSLLANY IDEKITAKPQ LSDGPMNANN
GLFLATNIDQ RILAPGYNTT TGREIIFSDD EYVTNPYFVT NQYVNDVSRK RLISMIATKY
QFADWIYAQG RVGYDNGNDR IFRVTPYGTA YSQDAKGGLD EQSNAQTTEL NIDGLISVSK
AITPDFSIDA IVGGNIRKNN YEKIGIGGGP FVLPYLYSYN NVVNFNRSYG FSKSEVQSAY
YSLDFSYKSF LNISTTGRYD AYSKLPSTAR TIFTPSVTGA FIFSEFVKTP SLSFGKLRAS
YAVTSGEPAD AYGTSVYYGV GSALNGVPTG NFSSSLPNLF LKPFTKSEVE VGLELKFFGN
RLGFDLAYFD QKTHNEILPA NYSPATGYTS GVVATGSTQN RGLEVLVTGT PVKTAKLAWN
VSFNLTSVKN KILQTDANNN PLGLGSNRAT LGNATTAFVV GESGPQIRAY DYKYASNGQI
IVDASGLPVR GNLINMGTVL PTLFGGLNNE FSFGNFNLAF LVDYNYGNKI LSATENYAYR
RGLHKATLVG REGGITTGVV EGGAANTVSA TAQNYYTALA NNVTKISVVD GDFIKLRQLT
FGYNIPASVL TKVPLIRAVN ISFVARNLFY IMKKTTNIDP EATFGANLRY AGIEGTSLPS
SRNYGVNLNI RFK
|
|---|
| |