| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3004 |
|---|
| Symbol | |
|---|
| ID | 8726755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 3636764 |
|---|
| End bp | 3638452 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | type I phosphodiesterase/nucleotide pyrophosphatase |
|---|
| Protein accession | YP_003387814 |
|---|
| Protein GI | 284037884 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGA TTATCCCTGT CTTGCTGGTG TCAATGGTCT CTACCGCGAC CCTGGCACAA
CCTAAGAAAA CGTTTCCGGG TACAGCGAAA TCTGTTACGT CTGCTCAACA ACCGGTGCCG
GGTAAACGGC TGGCAACCCC CAAACTTGTA GTCGGAATCG TTGTTGATCA AATGCGGTAT
GATTACTTAT ACCGCTATTA CAACAAGTTC AGCGCTGGTG GTTTTCGCCG AATGATGGAC
GGTGGGTTCA ACGCTCGAAA CAACCATTAC CATTATGCCG CAACTTATAC CGGTCCCGGT
CATGCCGCTA TTTATACCGG TTCGGCTCCC GCATTGAACG GTATTGTTGG GAATGATTTC
TACGAGCGAA ACATTGGCCG GTTATTGTAT TGCGCAGAAG ATACAACCGT TAAAACGGTT
GGAAATACGG GTACGGCGGG TAAAATGTCG CCCCGTAATT TGCTCGTCAC CACCATCGGC
GATCAACTGA AACTCGCCAC CGATGGTCGG GCTAAAGTTA TTGGAATTGC TTTAAAGGAC
CGGGGCGCTA TTTTACCGGC TGGTCATGCG GCCAATGCGG CTTACTGGTA CGACTCCAAA
GATGGCAATT TCATCAGTAG TACATTTTAT CAGAATGAGT TGCCGCAGTG GGTACAGGCG
TTCAATGCCC GAAAACTGTC TGATAAGTAT TTAAGCCAAA CGTGGGAAAC GACACTGCCC
CTAAGCCAGT ATACAGAAAG CACGCAGGAC GATGAACCTT ATGAAACTGT ATTAGCCGGT
GAGACAAAGT CTGTTTTTCC GCACGCGTTT GCCATTCAGG CGGGTGGTAG TAAATACGAA
CCCCTGCGAA CAAGCCCTTA TGGGGATGAA ATCACGAAAG AGTTTGCACT GGCGGCCCTT
AAGGAAGAGA AGCTGGGGCA GGGCAATGTA ACCGATATGT TATGCGTGAG TTTTTCGTCA
CCCGATTATA TTGGCCACGC GTTTGGTACA CACGCTATTG AAACCGAAGA TCAATACATT
CGGCTGGACC GCCAGTTGGC TGACTTGTTC AATCAACTGG ATGCGAGCGT TGGTAAAGGG
CAGTGGGTAG CGTTTTTATC GGCGGATCAT GGTGTTGTCG ATGCGCCGGG TTTTCTGCAA
CAGAATCGGA TTCCGGCCGG TGTGCGGGGC TACGGCGAGG TTGGTGAAGT GGTAAAGTCG
ACCCTCGAAA AGGCATATGG ACCCGGGCAG TGGGTGCTAT CGTACATGAA TCAGCAGATT
TATCTCAACC ATGCGCTGCT GACGGAGAAG AAGGTCGCCA TGCAGGATGT TTACGAACTG
CTTCGCTCCG TGTTGCTCAA GCAGAAAGCG GTAGTTAACG TTGTCAATCT GCATAACCTT
GGCGCAGAGG CATTACCCAC ATTGCAGGAA AACCTGTTCC GGAATGTGTA TCATCCTAAC
CGCAGCGGTG ATTTTTATGT CATGCAGCAA CCCGGTTGGC TTGAAGGGCG TAACAAAGGC
ACAACCCACG GCACAACCTA TGCCTACGAT ACGCACGTAC CCTTTTTGCT TTACGGTTGG
GGCGTTCGAC CGGGGCAAAC CCTTCGCCGG ACACATATCC ATGACATCGC TCCAACCATC
ACCGCCCTAC TCGGTCTGCT GGAGCCAAGC GGGTGTATCG GTAACCCGGT AGAAGAAGCG
ATTAAGTGA
|
|---|
| Protein sequence | MRLIIPVLLV SMVSTATLAQ PKKTFPGTAK SVTSAQQPVP GKRLATPKLV VGIVVDQMRY
DYLYRYYNKF SAGGFRRMMD GGFNARNNHY HYAATYTGPG HAAIYTGSAP ALNGIVGNDF
YERNIGRLLY CAEDTTVKTV GNTGTAGKMS PRNLLVTTIG DQLKLATDGR AKVIGIALKD
RGAILPAGHA ANAAYWYDSK DGNFISSTFY QNELPQWVQA FNARKLSDKY LSQTWETTLP
LSQYTESTQD DEPYETVLAG ETKSVFPHAF AIQAGGSKYE PLRTSPYGDE ITKEFALAAL
KEEKLGQGNV TDMLCVSFSS PDYIGHAFGT HAIETEDQYI RLDRQLADLF NQLDASVGKG
QWVAFLSADH GVVDAPGFLQ QNRIPAGVRG YGEVGEVVKS TLEKAYGPGQ WVLSYMNQQI
YLNHALLTEK KVAMQDVYEL LRSVLLKQKA VVNVVNLHNL GAEALPTLQE NLFRNVYHPN
RSGDFYVMQQ PGWLEGRNKG TTHGTTYAYD THVPFLLYGW GVRPGQTLRR THIHDIAPTI
TALLGLLEPS GCIGNPVEEA IK
|
|---|
| |