| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2792 |
|---|
| Symbol | |
|---|
| ID | 8726542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 3372974 |
|---|
| End bp | 3375766 |
|---|
| Gene Length | 2793 bp |
|---|
| Protein Length | 930 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003387606 |
|---|
| Protein GI | 284037676 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.111634 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAATAC ATACACGCTT AGAACGTTGG CTGGACACCC TGGATCAGGG GGTTGCTTTC
CTTAAACCCG TTTTCAATCC AGACACGCAC ACGACCAGTT TTCAGTGCCA ATATGTCAAT
ACCGCTCTGG CGAGCTGGAC TTCGCCAAAG CAGTGGAATG AGCAGTTGCA GACGGTTTTT
GATACTGGCC AGCCCTGGGA ACAGATCCTG CAATTACCGC CGACAAACCG ATGGTTTCAA
CTCCGGCTGA CTAGGCTGGA TGATGAACTG GTATTCAGTT TGCAGCCCCA GCTTAGCGGG
ATTGACACGC CGACCGCCGG TACGCTCCAG CAAACCGATC AAGTGCTACA GGCCGTTAGT
CCGACCAGTC CAACCGGATT AGCGTTACTA CCTCCCGGTG GGCAGCCTGA AACCATCTTC
CAGCCTACAG TTGAAGACGG GCTGTCTCAA GAAGTGGAAC AACTGCGTGC CGAAAAACGG
CAGTTGGAAG CCGTCATTCG CCAGCAACAA GAGGAGATAG CCCAACAGCA ACAACGCTGT
CAGGTTGCAC TCGAAAGCGT TAGCGATGCC ACCTGGGAGT ATAACCTGCG AACCGGAGAG
GTACTTCGGT CGGCCCGGTT TCGGGAAATT CTGGGCTATA CACTCGATGA GTTTCCCGAT
ACCATGGAAG CCTGGGAAGA CCGGCTTTAT CCGGGCGATA GGGAGGCTCT ACCCTGGCAC
GTACTGGATG CCTACCGGTC TGCCACCCGG GACAGCCATA GTGTAGCCTA TCGAATACGG
GCAAAAGACG GCACCTACAA ACACTTTCTG GACCGGGGAC GGTTGTGGCA ATGGTCGGCC
GATGGTAAAC CGCTGCTGAT CGTTAGCACC ATCACCGACA TGACCAACCA GAAAACCATG
GAGGAAACCC TCCGTCTGGA TGCGAACCGG CAGCGAAATC TGATTGCCAA CCTACAGGAG
GGCATTCTAT TCGAGGACGA GCAACGAACC ATTGTGCTGG TTAATCAACA TTTCTGTGAT
CTGTTCGCCA TTCCCGCTAC GCCCGACCAA CTCCGAGGCA TGGACTGTTC GGGTATGGCC
GAGCAGAGTA AGCACTATTT CAAAGAGCCT GCGGTATTTG TAGACCGGGT AGCCCACCTG
TTGCTCGAAC AGAAACCTGT AACCGGTGAA GAACTGGAAC TGGCCGATGG ACGCATTTTT
GAGCGCGATT ATGTGCCCAT TTTCATGGAT GGGGTTTACG CTGGCCACCT CTGGAAGTAC
GCCGACATCA CGAGCCGAAA ACGGAACGAA GCGTTGGCTA TGTACCAGAA GGAGAAGTAT
CAGCGGATTA TTGAAAACAT GAACCTGGGG CTGCTTGAAG TCGACCGGGA TGACCGGATC
GTCTATACCA ACCAGAGTTT CTGCGATATG AGCGGCTACG CCTACGACGA ACTCGTTGGT
AACATAGCCA AGGACATGCT GCTCAACGGG CAGCACCTTG ATGTCATGAG CGAAAAGAAC
AACAGTCGGC TCACCGGGGC GATGGATGCC TATGAGTTAG CTATCAATAA CAAACGGGGT
GAAGCTAAGT GGTGGCTGAT TAGTGGCGCT CCGCTCTATG CCGATACAGG TGAGGTCATT
GGCTCAACGG GTGTCGTCCT CGATATAACC AGGCAAAAGC AGCTCGAATC GGAGCTGCGC
GAGAGTGAGC AGCGGTTTCG GGAAATTGCC GAGAACGTCG ATGAGTTGTT TTGGATTCGG
GACCTGCATG CGCCGAAATT CCTGTATATG AATCCAACCT TTGAGCGATT TAGCGGTATT
CGTGTCGAGG AGTTATACCG CAATCCCTTA CGGTTTGCTG ATTTTGTTCA TCAGGATGAC
CGGGCGGCTG TACTGGCGGC TTTTCTAAGC GATGAGCCTG GTATGAACGC TACATTTCGA
GTAGTAAACC CGGAGGGAAC TATTCACTGG GTGAGAGCTA AAGTCGTTTT ATTGACGGAT
GAAACCGGTG TGCCCCGGCG CCGACTGGGT GTTGCCAGTG ATATTACGGC GGTCATTGAA
AACGAGCATA TCCTGGAAGC CTCACTGGCC AGGGAACGAG AGTTGAACGG GTTAAAGTCA
CAGTTTATTG CCACCGCTTC GCACCAGTTC CGAACACCCC TGATGGCCAT CACCTCCAGC
GCCGAATTGA TTCGCTATTA CTCCGCCCTG CCCACTGGAA CCCTGAAGCC CCCGCTTTTT
CTCAAACAGG CGGAAGCCAT CCTCAAACAG GTATCCTGGC TGGAAGAGTT GATGACCGAT
ACGCTGACGC TAAGCAAAAT TGAGGAAGGC AAAGTTACGC TTCGCCGAGA GGAACTGGAT
GTGGTCGGTC TATGTCAGAC GCTAATCGGG GATACGTTTT CCGAGCGCTC CGATGGCCGT
CAGGTAGACC TGGTGGTGGT GGGTTCGCCC GTGTCGGTTA GGGCCGACCG AACCTTACTG
AGTCATGTCC TGCAAAATTT ACTGTCCAAT GCATTTAAGT ATGCGGCCAC AAACCCGCAG
CTAACGGTCC AGTACGACCC GGGCCGGGTA ATGCTGGCCG TTGAGGATAA GGGAATAGGG
ATTCCGGCCA ACGAGCTGCC TTTATTATTT GGCAAGTTTT TCCGGGCCAG TAATGTCCAT
TCGATTCAGG GCAGCGGGCT GGGATTGGCC ATTTGTCGGG AATACGTCCA GTTGTTGGGC
GGCACGCTGG AGGTAGCGAG TACCGAAGGG GTTGGCACAA CCTTTCGTAT CCTGCTGCAA
ACAAGCGGTG GGACGGATTC ATCCGGGGGG TGA
|
|---|
| Protein sequence | MSIHTRLERW LDTLDQGVAF LKPVFNPDTH TTSFQCQYVN TALASWTSPK QWNEQLQTVF
DTGQPWEQIL QLPPTNRWFQ LRLTRLDDEL VFSLQPQLSG IDTPTAGTLQ QTDQVLQAVS
PTSPTGLALL PPGGQPETIF QPTVEDGLSQ EVEQLRAEKR QLEAVIRQQQ EEIAQQQQRC
QVALESVSDA TWEYNLRTGE VLRSARFREI LGYTLDEFPD TMEAWEDRLY PGDREALPWH
VLDAYRSATR DSHSVAYRIR AKDGTYKHFL DRGRLWQWSA DGKPLLIVST ITDMTNQKTM
EETLRLDANR QRNLIANLQE GILFEDEQRT IVLVNQHFCD LFAIPATPDQ LRGMDCSGMA
EQSKHYFKEP AVFVDRVAHL LLEQKPVTGE ELELADGRIF ERDYVPIFMD GVYAGHLWKY
ADITSRKRNE ALAMYQKEKY QRIIENMNLG LLEVDRDDRI VYTNQSFCDM SGYAYDELVG
NIAKDMLLNG QHLDVMSEKN NSRLTGAMDA YELAINNKRG EAKWWLISGA PLYADTGEVI
GSTGVVLDIT RQKQLESELR ESEQRFREIA ENVDELFWIR DLHAPKFLYM NPTFERFSGI
RVEELYRNPL RFADFVHQDD RAAVLAAFLS DEPGMNATFR VVNPEGTIHW VRAKVVLLTD
ETGVPRRRLG VASDITAVIE NEHILEASLA RERELNGLKS QFIATASHQF RTPLMAITSS
AELIRYYSAL PTGTLKPPLF LKQAEAILKQ VSWLEELMTD TLTLSKIEEG KVTLRREELD
VVGLCQTLIG DTFSERSDGR QVDLVVVGSP VSVRADRTLL SHVLQNLLSN AFKYAATNPQ
LTVQYDPGRV MLAVEDKGIG IPANELPLLF GKFFRASNVH SIQGSGLGLA ICREYVQLLG
GTLEVASTEG VGTTFRILLQ TSGGTDSSGG
|
|---|
| |