Gene Slin_2788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_2788 
Symbol 
ID8726538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp3367257 
End bp3368798 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content57% 
IMG OID 
ProductIntegrase catalytic region 
Protein accessionYP_003387602 
Protein GI284037672 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.952319 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0224954 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAACC AGCGTCTTCC TATGCACCTA CTCCGTCAGA TTCTGCTTCT CCAGCAGCAA 
CATAAGTCTA TCCGGGATAT TGCCCGTTCG CTAGGCCTGG CTCGCAATAC CGTCCGGGGC
TACCTGCGCA TGCTTCCCGA TCCGGCAACG CTTTCCCTCC CGCAACTCTC CGACCAACAG
TTGGATGAGC TGGTACAAAG TCGTCCGCCT GCGCCCTCAC CCGACGCCCC CCTAACTATT
CTTCAACAAC GATTCGCTCA GATTGACCGC GAACTGACCC GACCCGGCGT TACCCGGTAT
AGTCTTTGGC TGGATTACAA AGCCGAACAT CCCAACGGCT ATCAGTATAC GCAGTTCTGC
CACTATTATC AGCTTTGGAG CCAGCGGCAG CAGACCAGCA TGCACATTGA GCACAAAGCG
GGCGACAAAC TCTTCGTCGA CTTTGCGGGC AAGCGGCTCT CGCTGGTCGA CCAGACAACA
GGGGAGGTTA GGCCGGTCGA GTTCTTCGTG GCCGTGCTGG GTTGCAGTCA GCTCACTTAC
GCCCAGGTAG TGGCTACTCA GCGCAAGGAG GACTTCATCA CCGCCCTGCA AAACGCCCTG
CATTACTTCG GGGGCGTACC AGCGGCCATC GTGCCCGATA ACCTCAAAGC GGCTGTGATT
CGCTCGGATC GCTATGAACC CCAGATCAAT GAGACGCTGG CTGACTTTGC GCTCCATTAT
CAAACGACGA TCCTGCCGGC CCGGAGCGGT AAGCCCCGCG ACAAAGCTCT GGTCGAAGGA
GCCGTCAACA TCCTCTATCG ACGCATCTAC GCTCCCCTGC GCAATGAGGT CTTTCATCGA
CTTGACGATC TCAATGCGGC TATCCGCCCC TTACTCGACG CCCACAACCA AATGCGCTTT
CAGAACCGGG GCCATAGTCG GCAGTCGCAG TTCGAGGAGC GGGAGCGAAT GCACTTGATG
GGGTTGCCCA ACACGGCTTA TCTCATCAAA CACTATGCGG GGAGCCGGGT TCAGAAAAAC
GGCCATGTAC TGCTGTCAGA AGACAAGCAT TATTACAGCG TACCCTATCG CTACATCGGC
CAGTGGGTAC GGCTGATCTA CACGGCGTCA AGCGTTGAAG TCTACTGCCA GCACCAGCGT
ATTGCGACTC ACCAGCGATT ACAGGGACAG TACCATTACT CGACACTCAA AGAGCATTTG
CCCCCAGCCC ATCAGTGGAT CAGTGACTGG AGCCCGGAGA CGTTCGTCCG TCGGGCCGAC
CGCATTGGCC CCCAAACCCG GCAGGCCGTC GAAGCCATCC TAACGAGCCG GGCGCATCCC
GAACAGGCTT ATAAGTCGTG CCAGGGTGTA CTAAGTCTGG AAAAGAAAGT GGGTAGAGAA
CGTCTGGAGC GGGCCTGCCA ACGGGCGTTG TGCTACCAGA GCGTGAGCTA CAAAGTCATC
CGATCCATCA TCGAACGCGG GCTGGATACG CTCTCCGATG CCAGTCCTGT CAGCTCAGTA
CCCAGCCATG AAAACATCCG GGGCGCATCA GCCTACCAGT AA
 
Protein sequence
MANQRLPMHL LRQILLLQQQ HKSIRDIARS LGLARNTVRG YLRMLPDPAT LSLPQLSDQQ 
LDELVQSRPP APSPDAPLTI LQQRFAQIDR ELTRPGVTRY SLWLDYKAEH PNGYQYTQFC
HYYQLWSQRQ QTSMHIEHKA GDKLFVDFAG KRLSLVDQTT GEVRPVEFFV AVLGCSQLTY
AQVVATQRKE DFITALQNAL HYFGGVPAAI VPDNLKAAVI RSDRYEPQIN ETLADFALHY
QTTILPARSG KPRDKALVEG AVNILYRRIY APLRNEVFHR LDDLNAAIRP LLDAHNQMRF
QNRGHSRQSQ FEERERMHLM GLPNTAYLIK HYAGSRVQKN GHVLLSEDKH YYSVPYRYIG
QWVRLIYTAS SVEVYCQHQR IATHQRLQGQ YHYSTLKEHL PPAHQWISDW SPETFVRRAD
RIGPQTRQAV EAILTSRAHP EQAYKSCQGV LSLEKKVGRE RLERACQRAL CYQSVSYKVI
RSIIERGLDT LSDASPVSSV PSHENIRGAS AYQ