| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2692 |
|---|
| Symbol | |
|---|
| ID | 8726442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 3259937 |
|---|
| End bp | 3261265 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003387507 |
|---|
| Protein GI | 284037577 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.922433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.254416 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGT ACGTAATAGG GGCTGGCCTG TGGTTGTTGA GTCTGGGGTT AACAAACGCC
CAGTCGACAC CCTCGGTGCT GCCACTGAAT CAGGCTGTTC AACGGGCCTT ACAAAACAAC
AAGGGTATCA AACTGGCTGA CACTCGCACA CAGGCAGCCG AAGCCCGCGC GCAGGAAGCG
AAAGATCGTA GTTTGCCACA GGCCAATGCC TCCCTGGCGT ATTCGCGCTA TAGCCTGACT
GGCCCCTTTT CATTCGGAGA GGGTAGTGAT GGAAAAGCAT TACTAACAAT TCCGGCGGGG
GCTTTCAATG CAACCATTGG GGGCGCAACG ATCAGCAAAG AGGTTTTTGG CGGTTTCGCC
GAGAAGTCGG CTGAATTGTC GGCGAATTTA CTGGCCAGAG CCAGCCAACT GGATGCCCAG
CGCAACCGTT CCGAACTGGT CTACACCGTT ACGGAAGCGT ATTATAACAT CGTCAAGCTG
ATCCGCTCCA CCAGCGTTAT CGAGCAGAAT ATTAAACAGT TCGATGAGCG TGAACGTGAA
GCCCAGAATC TCCAAAAAGA GGGTGTAGTG ACGGCCAACG AAGTGCTGAA AATCCAGTTG
CAGCGCAACA ACCTGCAATT GAGCCGCCTA CAGGTTGAAA AAGCCCGCCA AACGGCCCTG
TATAACTTCA ACCTGCTCAT CGGCCTACCC GACGATCAGG TCATTACGGT CGATACCACG
CTGGCGAATC CGGTGGCAAC AGCCGAACCG CTGGCCAACT TCCTCGGCCA GGCATTACAG
AGCCGTCCGG AAGTACAGGC GAATTCACTG CGTGTGCAAT CAGCAGAAGC CATGCTTCGC
AATACCAAAA GTGCTATGTA TCCTCATCTG GGCGTATCGC TTGGCTACAA TTACATTAAT
CCATCGGCCC GACTTATTCC CGAAGCCAAT TCGTTCGTAA GTGCCTGGAA TGTTGGGGCG
GGGTTGTCTT ATAACATCGG TTCGCTTTAC AACATGAAAG GCAAGCTGAA TACGGCAAAA
ACAGCCATTG ATCAGGCGTC GATTCAGAGT GATCAACAAG CTGACCAGAT CCGGTCGGAG
GTCGTTACGG CCTACAACAA CTACCAATTG GCTCTGGAAC AGCAGAATGT TATCCGCACC
GCCGTCGGAC AGGCGCAGGA AAACTACCGC CTGACGGAAT CACGCTTCCG GAATGGACTG
GTTGGTTCAA CCGACCTGCT CGAAGCGGAC AGCTTCCTGC TCCAGGCTCA ACTCAATGTT
ATCAATGCCA CCGTGGATGC ACAATTGGCG TATCAGCGTC TGCTCAAAGC TACGGGCCAC
AACCTATAA
|
|---|
| Protein sequence | MKTYVIGAGL WLLSLGLTNA QSTPSVLPLN QAVQRALQNN KGIKLADTRT QAAEARAQEA
KDRSLPQANA SLAYSRYSLT GPFSFGEGSD GKALLTIPAG AFNATIGGAT ISKEVFGGFA
EKSAELSANL LARASQLDAQ RNRSELVYTV TEAYYNIVKL IRSTSVIEQN IKQFDERERE
AQNLQKEGVV TANEVLKIQL QRNNLQLSRL QVEKARQTAL YNFNLLIGLP DDQVITVDTT
LANPVATAEP LANFLGQALQ SRPEVQANSL RVQSAEAMLR NTKSAMYPHL GVSLGYNYIN
PSARLIPEAN SFVSAWNVGA GLSYNIGSLY NMKGKLNTAK TAIDQASIQS DQQADQIRSE
VVTAYNNYQL ALEQQNVIRT AVGQAQENYR LTESRFRNGL VGSTDLLEAD SFLLQAQLNV
INATVDAQLA YQRLLKATGH NL
|
|---|
| |