Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_2680 |
Symbol | |
ID | 8726430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 3242301 |
End bp | 3245921 |
Gene Length | 3621 bp |
Protein Length | 1206 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | Glycosyl hydrolase family 98 putative carbohydrate binding module |
Protein accession | YP_003387495 |
Protein GI | 284037565 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.117789 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGTCTG GTAAACAGTC TACAGCTTTC GGACAAACCA CGTATTACGT TGCCAACACT GGCAACGATT CGAATTCAGG TCGGTCGAGC GATGCTCCCT ACCAAACGAT CAGCAAAATC AACAGCCTTT CTCTGCAACC GGGTGATCAG GTTTTGTTTC GGCGCGACGA CACATTTACG GGCAATCTAC AAATCAAACA GTCCGGCACG AGCGACAAAC CCATTGTCGT GGATGCGTAT GGTTCTGGCA ACAAGCCGGT TCTTACCGGA GCCGTGGGCG TTACTGCCTG GACAAACATT GGTAATAATA CGTGGCAGGC ACTCTGCCCA TCCTGCGGAA GCCGGGTTAC GGGTTTGTAC CGCAACAACA CGAGTCTGCC CCTGGGGCGT TACCCAAACC TGGACGCAGC GAATAAAGGC TACCTGACGG TGCAATCGCA CACGGGTAAA ACCCAGTTGA CCAGCCAGCA GTCGTTACTG GCAAACTGGC TGGGGGGCGA GGTCGTCTAT CGTCCGGTGC AGTGGATTCT AAATCGCGCC ACCATTACTG GTCAGACGGG CAACAGCCTG ACCCTGCTGG GCTCGGGCAA TTATGACATC AGTGATAACT GGGGCTTCTT TATCCAGAAT CATCCCAACA CCCTCGACCA AACCGGCGAG TGGTACTACA ACCCATCCAC AAAAACGATT CAGTTGTACG ACAACCAGAC GAATCCCAAC ACTCAGAAAA TAACGGCTAC GGTTTTTTCT GATATCATTA CCGTATCAGG GGTATCGTTC ATAACGATTC GTAACCTCCA GCTTACCCAG GCGCTGTCGT CCAACCTGAC CGTAACCAAT AGCTCAAATC TGGTCATAAG CGGGAATGAC CTGACAAAAT CCGGTGAAGA TGCGCTGCTG GTTAAGGGAA GCGGGCAGCA GTTGTTAATT GAAAATAACC TCATCGAAGA TGCTAATAAC AATGGGGTTG ATATCGGCAC TTACCAGAAC GTCACATTCC GTGGGAACAT CATTCGGCGT GTTGGACTGA TACCCGGGCG GGGGAAGAGC GGGGACGGGA CGTATGTAGG CTTTCTGTCG GCAACGACGG CCAACATGCT CATTGAAGAT AACACCCTGG ATAATATCGG CTATAACGCG CTGAACTTCT CGGCGAACAC TACTATTCAG CGTAACCAGA TCAGCAATTT CTGTCTGACG AAAAGCGATG GCAGCGGTTT GTACATCTGG AACGGCAATC AACTACCCAT GGCCAATATT CGTCTGGTCG CCAACACAGT AACAAACGGA ATTGGGGCTC CGGAAGGAAG CCCGGCGGGT AGTTCCTCTG GAGCCAATGG CATTTATCTC GACGATTGCA CGACGAATAT CGAAGTAAGT GGCAACACGG TTGGGCATTG CAAGGGCCTC GGTATTTTCC TGCATGGTTC TTCCAACATC ACTCTGAGCG GAAACACGTC TTTTAACAAC AATGAGGGAC AACTGGCCAT TATGAGTGCC AACGGCTGTC AACCCCGGAA TAACATCATT CAGAACAATA TTCTTGTTAG CCGACTAGCC AGCCAGTTTC TGGTCAAATA CGAATCAAAT CAGAATGATT TGGGCAGTTA CGGTGAATTC AACAACAACG TTTATGCCCG TCCTTTCGAT GATGTGTATA AAATTCTAAC GGTTTATAAC CGAAACATTG GTGCCAGCCT GTCGATGGCG CAGTGGCAAA CCCAATATGG CAAAGACCTG ACATCGAAAA ACAGTCCCAT CACCTATTCG TCCGGTAACG CGGATGATTA TTTGAAGCTA TTGACAAACC CAACCGCTAA CCCGGTTCAG GTACCGCTCA CTGGCACCTA CCGCGATGCG CGAAATACGA TCTGCACCAA TCAGGTAACC ATTCCCGCCT ACGCATCCGT CGTTCTCTTT AAAGATAACA CCCCCGTTGT CTCGTTACGT GATCCGGAAA ATCCGACCAA TACCATTGCC GGGCTTGATT ATCAGTATTT TGAAGGCAGT TGGAGCACCA TGCCCGATTT CAACGCGCTG ACCACCAGTA AAACGGGAGC CGTTTCCAGC CCGGATTTAT CCGTTCGTAA CCGCACCGAC AATTTCGGCA TTCGATTCAA AGGGTACATC AACGTACCTG CCGATGGGGT CTATACTTTT TATACCAGCT CTGATGATGG CAGCAAATTA CTCATCGGCA ACACCGAAGT GGTGAACAAC GACGGCGTAC ATGCAGCCAT TGAAAAAGCA GGCACAATTG GCTTGAAAGC CGGCAAACAC GCTCTAACAG TTTTGTATTT TCAGGGCGGT GGAGGACAGG CCCTAAGCGT CAGCTACGAG GGGCCGGGTA TTGGCAAACA AGCGATTCCG GCAACAGCCT TATATCGGAT ACCAACCAGC ACGAGTGGGC AAGGGAGTGG TACCGGTCTT ACTGGTACCT ATTTCAATAA CGTTACCCTT ACGGCTCCGG CTTCACTGAC CCGCACCGAT GCCACGGTAA ACTTCGACTG GGGCACCGGC TCCCCCGCTG CCGGAACCAT AGGCACTGAT AATTTTTCGG TTCGCTGGAC CGGACAGGTC GAAGCACCCG TTACGGGCAA TTATACCTTT AGCACAACAT CGGATGATGG CGTTCGGCTT TGGGTGAACG GCGCACAGGT CATTAATAAC TGGACCGTTC ATGCGCCAAC AACGAACAAC AGCCCGGTTG TTGCCCTAAC CGCCGGTCAA CGGTATACGA TTCAGATGGA GTATTACGAC GGAGGTGCGG GTGCGGTAGC GAAGCTGTTA TGGGCATACC CCGGTCAGAC CCAGCAGCCT GTCCCCCAAA GCTATTTGTA TCCACCTGTA TCGAGTACTA CACCAATGGC AACCCCACCA ACCTCGGCTA CGGGCACCGG CATTTATTTA TCTGACCTCA ACTGGACATC AGCAACAAAT GGCTACGGAC CGGTGGAGAA AGACCAGAGC AATGGCGAAA ATAACGCGGG CGACGGCAAA ACAATCACCC TGAACGGCGT AACCTATGCA AAGGGGCTTG GCGTACATGG CCTCGCGACT ATTACCTATG CATTGAATGG TCAGTATAGC CGCTTCCTGA CAGACATTGG CCTCGACGAT GAGGTCAGCA CCTGCGGAAC AGTGAGCTTT GACGTTTACC TCGACGATGT ACTGGCGTAC AGCAGTGGCG TAATGGGCCC AACGACGGCC ACAAAATCAA TCGACCTCAA CGTGTCGGGC AAGCAAACCC TTAAATTGGT TGCCACAAAC GGGGGCGATG ATGCTTCCTG CGACCACGGC GACTGGGCTG GTGCCCGCCT GATTAGTACC AGTGGTGCCC GCGTGGCCAA CCCCGAGTTG TTCCGGGAAT CACGCATGAA CGCTTACCCC GTACCCGCCA AAGAGGTGAT GTGGGTGAAG TATTATGCCG AAACAGCCGG AGACGCAACG GTCCAACTGG TCAATATGAT GGGGCAGCCA GTCCATCAGG CAACCCATCA GCTTATTCAG GGCGAGAATC TCCTTAAAGT TATGGTCGAT CAATACAACC GCGGAAGTTA TATCCTGATG CTGACAAAAG ACCAGCAGCG GCAAACCCAA AGAGTCATTC TTATCGATTA A
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Protein sequence | MLSGKQSTAF GQTTYYVANT GNDSNSGRSS DAPYQTISKI NSLSLQPGDQ VLFRRDDTFT GNLQIKQSGT SDKPIVVDAY GSGNKPVLTG AVGVTAWTNI GNNTWQALCP SCGSRVTGLY RNNTSLPLGR YPNLDAANKG YLTVQSHTGK TQLTSQQSLL ANWLGGEVVY RPVQWILNRA TITGQTGNSL TLLGSGNYDI SDNWGFFIQN HPNTLDQTGE WYYNPSTKTI QLYDNQTNPN TQKITATVFS DIITVSGVSF ITIRNLQLTQ ALSSNLTVTN SSNLVISGND LTKSGEDALL VKGSGQQLLI ENNLIEDANN NGVDIGTYQN VTFRGNIIRR VGLIPGRGKS GDGTYVGFLS ATTANMLIED NTLDNIGYNA LNFSANTTIQ RNQISNFCLT KSDGSGLYIW NGNQLPMANI RLVANTVTNG IGAPEGSPAG SSSGANGIYL DDCTTNIEVS GNTVGHCKGL GIFLHGSSNI TLSGNTSFNN NEGQLAIMSA NGCQPRNNII QNNILVSRLA SQFLVKYESN QNDLGSYGEF NNNVYARPFD DVYKILTVYN RNIGASLSMA QWQTQYGKDL TSKNSPITYS SGNADDYLKL LTNPTANPVQ VPLTGTYRDA RNTICTNQVT IPAYASVVLF KDNTPVVSLR DPENPTNTIA GLDYQYFEGS WSTMPDFNAL TTSKTGAVSS PDLSVRNRTD NFGIRFKGYI NVPADGVYTF YTSSDDGSKL LIGNTEVVNN DGVHAAIEKA GTIGLKAGKH ALTVLYFQGG GGQALSVSYE GPGIGKQAIP ATALYRIPTS TSGQGSGTGL TGTYFNNVTL TAPASLTRTD ATVNFDWGTG SPAAGTIGTD NFSVRWTGQV EAPVTGNYTF STTSDDGVRL WVNGAQVINN WTVHAPTTNN SPVVALTAGQ RYTIQMEYYD GGAGAVAKLL WAYPGQTQQP VPQSYLYPPV SSTTPMATPP TSATGTGIYL SDLNWTSATN GYGPVEKDQS NGENNAGDGK TITLNGVTYA KGLGVHGLAT ITYALNGQYS RFLTDIGLDD EVSTCGTVSF DVYLDDVLAY SSGVMGPTTA TKSIDLNVSG KQTLKLVATN GGDDASCDHG DWAGARLIST SGARVANPEL FRESRMNAYP VPAKEVMWVK YYAETAGDAT VQLVNMMGQP VHQATHQLIQ GENLLKVMVD QYNRGSYILM LTKDQQRQTQ RVILID
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