| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2617 |
|---|
| Symbol | |
|---|
| ID | 8726362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 3161892 |
|---|
| End bp | 3163331 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003387434 |
|---|
| Protein GI | 284037504 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.205144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGCG GAGGGAAACG AAAAATTTGG CTACTGACCA CCATCGCCAG CTACTGGGTT
GGCCAGTGTT TAGCTCAATC GGGTACGGTG TCCTCGGCCC AAATAACCCA GCTTGCACTG
CCCAAAGCCC TGGAGCTGGC CCGGTCCAGT TACCCCAGTC TGCGCGGGAA ACAGGCCAGC
ATCCGGGCCG CCGAAGCCGA TGCCCAGAGC CTGAATATGG CGCTCCTGCC TCAGGCGGGT
GTGCAGGCGC AAACGCTCAA CGCAACATCC AATCAGGTGC GGGGTGCCTA CGTTTCCAAT
GGCGGTCTGC TGCTGCCTAT TTCGGGGGTG CGCACCGATG GGTTTAGCAA TCAGGCCGCG
TGGACCAGCG GGGTGTCGAT GGTGGTCGAC TGGGAGGCCG TCACCTTTGG TCGCCGACAG
GCCCGGCGAA GTCAGGCCCG GTTAGCCGTC GAGCAGGCGC AGGCTGATTA TGAAGGCGAG
TTATTTACGC ATCAGGTTCG GGTTTGCGAC GCGTACCTGT TAGCCCTTAA CGCTCAAAAG
TCGGTTGCCC TGCAAACGGC CAATCTTGGC CGCGCTCAGG AACTCCAGCG AATTATCCGG
GCCAGTACGG AAGGGGGGCT CCGGCCCGGA ATTGACAGTT CCGTGGCCAA CGCCGAAGTG
GCCCGCGCCC GCCTGCAAGT GTTGGAGAGT CAGCAGTTGG CCCAGCAGCA GGTGCTCCGG
CTGACGGAAT TGATCGGGCT TCCCAATCCG TCCGTACAAC TGGACTCGAT GGCTTTTTAT
GACCGGTTTC CCCAATTACC CCTGGTGCCC GGCAGCAATC CGTCTATACA TCCTCAACTA
CGTGTTTTTC AGAAAACGAT TGATCTGGGG AGAGCCAGTG AAACGCTCCT GAAAGCGTCG
GCATTACCGT CCGTTTCGGT GCTGGGATCG CTTCAGGGGC GGGGCTCCGG TATCGGCGAG
CAGGCACAGG CCGACGGCAC CTTCCGAATC GACCCGTCGC TGGGTGCGGG CTTACCATTA
CGGTCCTACA ATTACATCGT TGGAGTAACA GCCATCTGGC GACCCACCGA TCTGTGGCGC
ATCAAATACG CCCTGTCGGC CCAGCGCGAG CGAATCAGAG CCAGTCAGCA AGCTTACGAT
CAGCAGGCGC TGGGTATTCA GGCCGCCAAC CAGAATGCCG TTTTACAGCT GGAACTGGCC
CAGGCAAGGG CCGAGCAGGC ACCCCTTCAA CTCGATGCCG CTAAACAGGC GTATATCCAG
TCGCAGGCCC GCTATGAATC CGGTCTCGAC AATATCCAGG CCTTGACCCA AACGAGTGCG
CTTTTGAATC GGGCGGAGGT CGATCAGGCG CTGGTCACGA ACAATGTATG GCGTGCCCTG
CTCTTTCGGG CGGCTACGGT CGGCGATTTA GAGCCTTTCC TCCAACAACT TTCCCGCTAA
|
|---|
| Protein sequence | MLSGGKRKIW LLTTIASYWV GQCLAQSGTV SSAQITQLAL PKALELARSS YPSLRGKQAS
IRAAEADAQS LNMALLPQAG VQAQTLNATS NQVRGAYVSN GGLLLPISGV RTDGFSNQAA
WTSGVSMVVD WEAVTFGRRQ ARRSQARLAV EQAQADYEGE LFTHQVRVCD AYLLALNAQK
SVALQTANLG RAQELQRIIR ASTEGGLRPG IDSSVANAEV ARARLQVLES QQLAQQQVLR
LTELIGLPNP SVQLDSMAFY DRFPQLPLVP GSNPSIHPQL RVFQKTIDLG RASETLLKAS
ALPSVSVLGS LQGRGSGIGE QAQADGTFRI DPSLGAGLPL RSYNYIVGVT AIWRPTDLWR
IKYALSAQRE RIRASQQAYD QQALGIQAAN QNAVLQLELA QARAEQAPLQ LDAAKQAYIQ
SQARYESGLD NIQALTQTSA LLNRAEVDQA LVTNNVWRAL LFRAATVGDL EPFLQQLSR
|
|---|
| |