| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2550 |
|---|
| Symbol | |
|---|
| ID | 8726295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 3082855 |
|---|
| End bp | 3083934 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003387367 |
|---|
| Protein GI | 284037437 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0105666 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0985719 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC ACGTTCTCCT GGTAATCGGC AGTTTAGCTG TCCTGGGTTC CTGTGCCCCC
AAGCCAGCGC CTGAGGAAGC ACAGGCCTTT ATGCTTTCCG ATACGATGCT ACGCCGTATT
CGGCTCGATA GTGCGTTTAC CCAGCCCGTA CGGAGTGAGT TGACGCTCGT CGGTAAGATC
GTTGCCGACG AAAACCGGGT TGTCAAAGTG TTCCCGCTGG TGGGGGGCAA TGTAGAAGAT
GTAAAGGTTG AACTGGGTGA TTTTGTGCGG AAAGGCCAGA CCCTGGCGGC CATCCGCTCC
GGCGAAGTGG CCGATCTCAA GCGGCAGACC ATACAGGCCC AGTCTGATTT GCTGGTGGCA
GAAAAGAACC TTCGAGTAGC ACAGGACCTG CTCGAAACGA AGCTTACGTC TCAGCGCGAA
GTAGTAGCTG CCCAGAAAGA GGTCGAAAAA GCGCAGGCCG AAGCAAACCG GATCAGCGAA
GTGTCGCAGA TATACGGCAT CAACAACGCG TCGATGTACA CTGTAAAAGC ACCCATCGAT
GGCTACGTGA TCGAGAAGAA TGTTAACCGC GACATGCAGC TCCGCTCCGA TAACGCCGAT
AACCTGTTTA CGATCGGGCA GATCAGTGAT GTGTGGGTGC TGGCCAATGT CAACGAAAGT
GATATCCGGC GAGTGCATAC CGGCATGCAG GCGAGTATAC AAACGCTGAG TTACCCCGAT
GAACGTTTTA CCGGGCATGT CGATAAAATC TATACTGTGC TCGACCCGCG AACTAAGGCT
ATGACCGTTC GGATTCGGCT GCACAACACG GGCATGAAAC TACGGCCGGA AATGCACGCT
ACCGTGACCC TGCGCTATGA AGAGGGTGGA CAATTAGCCA CCGTACCCGC TAAAGCCGTC
ATTTTCGATC GCTCCAAGCA GTACGTGCTG GTTTTCAAAA GCCGTTCCAA CATTGAAACC
CGTGAGGTCA GCGTCCTCAA ATCACTCGGC GATGTCGCCT ATATCAGTCA GGGCATCAAA
CCGGGCGAAA AAGTTATCTC CAAAAGCCAG CTGCTGGTCT ACAACGCCCT GAATAACTAA
|
|---|
| Protein sequence | MKIHVLLVIG SLAVLGSCAP KPAPEEAQAF MLSDTMLRRI RLDSAFTQPV RSELTLVGKI
VADENRVVKV FPLVGGNVED VKVELGDFVR KGQTLAAIRS GEVADLKRQT IQAQSDLLVA
EKNLRVAQDL LETKLTSQRE VVAAQKEVEK AQAEANRISE VSQIYGINNA SMYTVKAPID
GYVIEKNVNR DMQLRSDNAD NLFTIGQISD VWVLANVNES DIRRVHTGMQ ASIQTLSYPD
ERFTGHVDKI YTVLDPRTKA MTVRIRLHNT GMKLRPEMHA TVTLRYEEGG QLATVPAKAV
IFDRSKQYVL VFKSRSNIET REVSVLKSLG DVAYISQGIK PGEKVISKSQ LLVYNALNN
|
|---|
| |