Gene Slin_2541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_2541 
Symbol 
ID8726286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp3066128 
End bp3067531 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content50% 
IMG OID 
Productalpha amylase catalytic region 
Protein accessionYP_003387358 
Protein GI284037428 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0134925 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAAT CGTACCTGCA CGTCCTGTTA AGTGCGTTGC TACTGGCAAC GAGCTGTCAA 
CAAACAAAAA CGGACCAAAG CGGAACAGCT ATTTCCGATA CGACAAAACA GGCCGCTCCC
CCGGCTCCCG AGTGGGCTAA AAATGCGACG ATTTATGAAG TGAACATTCG CCAGTTTTCG
GCAGAAGGAA ATTTCAAGGC CGTTGAAGAA CAGCTACCGC GACTCAAAGA GTTGGGGGTC
GATATCGTTT GGCTGATGCC AATTTATCCC ATCAGCCAGA AAAATAAGAA GGGAACACTG
GGTAGCCCTT ATGCCATTGC GGATTACAAA AGCGTCAACC CGGCCTATGG TACGCTTGCC
GATTTCAAAT CCCTTGTTAA CCGCGCTCAT GCCCTGGGTC TGCGAATCGT GCTGGATTGG
GTAGCGAATC ATACCGGCTG GGACCACGTG TGGGTGAACG AGCACCCGGA CTGGTACACC
AAAGTGAACG GTAAAATGAT AGCGCCCATT GACCCCAAAA CCGGAAAGCC TACCGAATGG
ACCGATGTCG TTGATCTGAA TTACGATAAC CCCGATATGC GTAAAGGCAT GATCGATGCC
ATGCAGTACT GGGTTAAAGA GTGCGGCATT GACGGCTACC GCTGCGATGT AGCGGGGTTT
GTTCCGAATG ATTTCTGGGC TGAACTGCGG CCCCAGCTGG ATAAAATAAA AACCGTATTC
ATGCTGGCAG AATGGGAAGA TGAGCCCGAC CACTTCAAGA GTTGTTTCAA TATGAATTAC
GGCTGGAGTA TGCATACCAT GATGAAAGCC GTAGCAAAGG GTGCCCGCAC CGCCGACAAA
ATCGATTCCC TGCGCGAAGC CAATCAGAAA CGGTTTCCTA AATGGTACTA CCAGATGCTG
TTCACGCAGA ATCATGATGA GAACGCCAAT AATGGTACCC TGGCAGAATC ATTCGGTCCC
GCAGCCGACG CCCTCGTTGT CCTGAGCAGT ACGCTGGAAG GCATGCCGCT GATCTACAAC
GGTATGGAGG CTAACCTGAA CAAACGGTTG GCGTTCTTCG AGAAAGACAC CATTGTCTGG
AATAATTACC CCAAGAGCGA CTTTTATAAA ACGCTGCTCA CATTAAAACA CCGTAACCGG
GCTCTCTGGA ACGGATTGGA TGGCGGCAAA GCGGTTAAAA TCCCGACTGA CCACGACGAT
AAAGTATACG CTTTTTACCG GCAACGAGAC AACGACCGCA TCACGGTTTT CCTGAATCTG
AGCAATGAGC CCCAAACCGC TCGGCTAACA GGCGATGGAT ATGCCGGTAC CTACACCGAT
GTGTTCAGTC ATCAGCAAGT TGAATTGAAA CCGGAGATCA CGATCACGCT AAAACCCTGG
GAATACCGGG TCATGACAAA CTAG
 
Protein sequence
MNKSYLHVLL SALLLATSCQ QTKTDQSGTA ISDTTKQAAP PAPEWAKNAT IYEVNIRQFS 
AEGNFKAVEE QLPRLKELGV DIVWLMPIYP ISQKNKKGTL GSPYAIADYK SVNPAYGTLA
DFKSLVNRAH ALGLRIVLDW VANHTGWDHV WVNEHPDWYT KVNGKMIAPI DPKTGKPTEW
TDVVDLNYDN PDMRKGMIDA MQYWVKECGI DGYRCDVAGF VPNDFWAELR PQLDKIKTVF
MLAEWEDEPD HFKSCFNMNY GWSMHTMMKA VAKGARTADK IDSLREANQK RFPKWYYQML
FTQNHDENAN NGTLAESFGP AADALVVLSS TLEGMPLIYN GMEANLNKRL AFFEKDTIVW
NNYPKSDFYK TLLTLKHRNR ALWNGLDGGK AVKIPTDHDD KVYAFYRQRD NDRITVFLNL
SNEPQTARLT GDGYAGTYTD VFSHQQVELK PEITITLKPW EYRVMTN