Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_2541 |
Symbol | |
ID | 8726286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 3066128 |
End bp | 3067531 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | alpha amylase catalytic region |
Protein accession | YP_003387358 |
Protein GI | 284037428 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0134925 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAT CGTACCTGCA CGTCCTGTTA AGTGCGTTGC TACTGGCAAC GAGCTGTCAA CAAACAAAAA CGGACCAAAG CGGAACAGCT ATTTCCGATA CGACAAAACA GGCCGCTCCC CCGGCTCCCG AGTGGGCTAA AAATGCGACG ATTTATGAAG TGAACATTCG CCAGTTTTCG GCAGAAGGAA ATTTCAAGGC CGTTGAAGAA CAGCTACCGC GACTCAAAGA GTTGGGGGTC GATATCGTTT GGCTGATGCC AATTTATCCC ATCAGCCAGA AAAATAAGAA GGGAACACTG GGTAGCCCTT ATGCCATTGC GGATTACAAA AGCGTCAACC CGGCCTATGG TACGCTTGCC GATTTCAAAT CCCTTGTTAA CCGCGCTCAT GCCCTGGGTC TGCGAATCGT GCTGGATTGG GTAGCGAATC ATACCGGCTG GGACCACGTG TGGGTGAACG AGCACCCGGA CTGGTACACC AAAGTGAACG GTAAAATGAT AGCGCCCATT GACCCCAAAA CCGGAAAGCC TACCGAATGG ACCGATGTCG TTGATCTGAA TTACGATAAC CCCGATATGC GTAAAGGCAT GATCGATGCC ATGCAGTACT GGGTTAAAGA GTGCGGCATT GACGGCTACC GCTGCGATGT AGCGGGGTTT GTTCCGAATG ATTTCTGGGC TGAACTGCGG CCCCAGCTGG ATAAAATAAA AACCGTATTC ATGCTGGCAG AATGGGAAGA TGAGCCCGAC CACTTCAAGA GTTGTTTCAA TATGAATTAC GGCTGGAGTA TGCATACCAT GATGAAAGCC GTAGCAAAGG GTGCCCGCAC CGCCGACAAA ATCGATTCCC TGCGCGAAGC CAATCAGAAA CGGTTTCCTA AATGGTACTA CCAGATGCTG TTCACGCAGA ATCATGATGA GAACGCCAAT AATGGTACCC TGGCAGAATC ATTCGGTCCC GCAGCCGACG CCCTCGTTGT CCTGAGCAGT ACGCTGGAAG GCATGCCGCT GATCTACAAC GGTATGGAGG CTAACCTGAA CAAACGGTTG GCGTTCTTCG AGAAAGACAC CATTGTCTGG AATAATTACC CCAAGAGCGA CTTTTATAAA ACGCTGCTCA CATTAAAACA CCGTAACCGG GCTCTCTGGA ACGGATTGGA TGGCGGCAAA GCGGTTAAAA TCCCGACTGA CCACGACGAT AAAGTATACG CTTTTTACCG GCAACGAGAC AACGACCGCA TCACGGTTTT CCTGAATCTG AGCAATGAGC CCCAAACCGC TCGGCTAACA GGCGATGGAT ATGCCGGTAC CTACACCGAT GTGTTCAGTC ATCAGCAAGT TGAATTGAAA CCGGAGATCA CGATCACGCT AAAACCCTGG GAATACCGGG TCATGACAAA CTAG
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Protein sequence | MNKSYLHVLL SALLLATSCQ QTKTDQSGTA ISDTTKQAAP PAPEWAKNAT IYEVNIRQFS AEGNFKAVEE QLPRLKELGV DIVWLMPIYP ISQKNKKGTL GSPYAIADYK SVNPAYGTLA DFKSLVNRAH ALGLRIVLDW VANHTGWDHV WVNEHPDWYT KVNGKMIAPI DPKTGKPTEW TDVVDLNYDN PDMRKGMIDA MQYWVKECGI DGYRCDVAGF VPNDFWAELR PQLDKIKTVF MLAEWEDEPD HFKSCFNMNY GWSMHTMMKA VAKGARTADK IDSLREANQK RFPKWYYQML FTQNHDENAN NGTLAESFGP AADALVVLSS TLEGMPLIYN GMEANLNKRL AFFEKDTIVW NNYPKSDFYK TLLTLKHRNR ALWNGLDGGK AVKIPTDHDD KVYAFYRQRD NDRITVFLNL SNEPQTARLT GDGYAGTYTD VFSHQQVELK PEITITLKPW EYRVMTN
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