Gene Slin_2496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_2496 
Symbol 
ID8726240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp3017717 
End bp3018832 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content54% 
IMG OID 
Producthypothetical protein 
Protein accessionYP_003387314 
Protein GI284037384 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0619786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.163334 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTCGC TTAATCCAAT CCTCGTTACT CAACCTACTA CGGCCTTTTC GTTTGCCAAA 
GCCAAAGAGG CCTTAGGTAA TCAACTGCGC AGCCCCTTTT TTATCCGGCT GCTGTCGTGG
GAATACTGGC CCTTTGCGGT CGTATACGTA CCGGTTTTTG TGTACTGGCT CTGGTTGTCA
CTCAAAGCCC GGTCGTTCTT CTTCTTCTCG GCGGCCAATC CGTCCATCGA GTCGGGCGGA
CTACTGGGTG AATCGAAGAT CGATATTCTG GATAAAATCA GTGATGAGTT CAAGCCCAAA
ACCCTGTTTG TGTCGGCTTC CCCTGATTTG CATAGCCTGT TCGGTCGGGT GGAAGGAGCG
GGGCTTACAT TTCCGTTGAT TGCCAAACCT AATGCCGGAG AGCGAGGCTG GCGGGTGGAA
AAGCTGAATC GCTGGGAAGA TCTGCTGGAT TATTCGCAGG AAAGCCCCGT CGATTTTCTG
CTGCAGGAAT ACGTAGACTA TCCGCTGGAA CTGGGGGTTT TCTACTACCG GATGCCGGGC
CAGCAACAGG GGACGATCTC GTCTATTGTT GAGAAGGAAT TTTTGAGTGT GACAGGAAAC
GGCCGGGATT GTATCGAAAC GTTGATTCGT CAGAATGACC GTGCCCTCCT TCAACTCGAC
GCCCTGACCG CCCGATACGG CGACGAACTG GAACGCATTC CCATACCCGG CGAAACGGTT
CTGCTCATGC CCATCGGCAA CCATAGTCGG GGGACCAAGT TCCTGAATGC CAACTACCTG
ATCACGCCGG AACTGACCCA GCTGTTCGAC CGCATTAGCG GCTCCATCGA CGGGTTTTAC
TTTGGTCGCT ATGATCTTCG GTGCCGCAGC CTAGCCGATT TATACGCTGG TGAGCACATC
CGTATTCTCG AACTGAATGG AGCCGGGGCC GAACCCGCGC ATATCTACCA GCCCGGTTTT
TCGATCTGGG AGGCCTGGGG TATCCTGCTC CATCACTGGC GGGTGCTGTT CGACATCAGC
CGGGAAAACC ACCGTCGGGG GGTGGCTTAC ATGACCTTCG CCGAAGCCCA CACGATTTAC
AAACGGATTC AAGCCGGTAA AACTCAACCC AACTAA
 
Protein sequence
MQSLNPILVT QPTTAFSFAK AKEALGNQLR SPFFIRLLSW EYWPFAVVYV PVFVYWLWLS 
LKARSFFFFS AANPSIESGG LLGESKIDIL DKISDEFKPK TLFVSASPDL HSLFGRVEGA
GLTFPLIAKP NAGERGWRVE KLNRWEDLLD YSQESPVDFL LQEYVDYPLE LGVFYYRMPG
QQQGTISSIV EKEFLSVTGN GRDCIETLIR QNDRALLQLD ALTARYGDEL ERIPIPGETV
LLMPIGNHSR GTKFLNANYL ITPELTQLFD RISGSIDGFY FGRYDLRCRS LADLYAGEHI
RILELNGAGA EPAHIYQPGF SIWEAWGILL HHWRVLFDIS RENHRRGVAY MTFAEAHTIY
KRIQAGKTQP N