| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2469 |
|---|
| Symbol | |
|---|
| ID | 8726213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 2980916 |
|---|
| End bp | 2982841 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 641 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | Glycoside hydrolase 97 |
|---|
| Protein accession | YP_003387287 |
|---|
| Protein GI | 284037357 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.395097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATC GATTAGCTTA CAAAAACCTT CCCTTTTTAA TAGGCGCAAT TTTCCTTTTT
AACAGTTTTA AGGCAGCAAG CCAATCGATG AGCCTGAGTT CAAAGGCTGG AGCAAATAAA
ATTACTTTGT CTTTGACCAA AAATGGAGAA TTGCATTATC AGGTAACCCG CCGAGGTAAA
CCCATAATTA CCGACTCTCC GCTCGGCCTA AGCTGCGACG AGCAGAATTT TACGTCTGGA
CTCTCAGTCG TTCGCGTTTC ACCCATTGAC GTAAGAAGAG AGAAATACGA CCTGAAGGTG
GGGAACGTCA AAACGATAAA TCATGTCCTT GAAACCAAGA GTGTAACATT TAAAAATAAG
TCGGGCGCGC TCATGATCAT TGATCTGGTC ACCGGCGATG AGGGCGTTGC TTTCCGCTAC
CGTTTCCCGG ATCAGGACAG AAAAATACGG GTGATTAACA ATGAGATTAC AGGATTTCAT
ATTGAAAAAA ATGCCAGGGG TTGGTTGCAG CCTTATAATA AAGCGGGAAA GGTCACCCCG
GGCTACGAAG ATTTTTACTT TAATATACAC CCAGGCGACT CAATCCGTAA TCCCCGTAAC
CCGTCTGTGG GGTGGTGTAT GCCAGCCCTG TTTCAGGTAA ATGATAGCAA AAACTGGGTT
CTACTCGCGG AGTCCGGAAC GGATGGTTCG TATCCGGGTT GTCATTTACA ACCCGACTCC
AGGGGTGGGC TGTACAAAAT TGCCTTTGCT GAAAAAGACG AAAAATACAA CCTTCCCCTG
AGCGAAAACA ATCATCCAAC ATCCAGTCTT CCCTGGGCTA TGCCCTGGCG GGTGATCATC
ATTGGCGACC AGGCCGGGGA CATACTGCTG TCTACCCTCA TTACGGATTT GGCTCCTGCC
TCTAAAATCG ACGATACATC CTGGATCGAA CCGGGAAAAG CCACCTGGTC ATGGTGGTCC
CATCCCGAAG ATCATACCCC TGACATGTAT AACCAATTCA CGGATCTTGC TGCTTCGTTC
GGGTTTGGCT ACACGCTGTT TGATGCAGGC TGGGAGAAAG CCAACTCAGA AGGGGGCATC
ATTGCCAAGG CTACTTCCAG AGGAGTTAAA CCCATGGTGT GGGGCTATTC GGCAGCGTAT
TTCGATCCGG AAAAACGAAG AAAGCGGTTT AAAGAATTGG CAGATATGGG CGTGAAAGGG
GTCAAAATAG ATTTTTGGTG CTCAGACCGG CAGGAGGTGA TGGCCTGCTT CCCCTCACTT
TTTGAGGATG CTGCGAAAGA GCATTTACTG ATCAACCTTC ATGGTACTAC CGTTCCAAGA
GGCTGGCATC GGACATGGCC AAATTTCATG ACAGCCGAAG CAGTTCTGGG TACGGAACAC
TATTTTTACG AATCCCGATA TCCGGATAAA GCCGCCGAGC AGAATACCGT ACTGCCATTC
ACCAGAAATG TAGCTGGCCC TACAGACTAC ACACCGTTTG CACTAACCAT TCGAAAATAC
CCCCGGTTGA ACACGGCGGT TCATGAGCTT GCAACGGCGA TGATCTATAC GTCGGGAATT
ATCCATTTTG CGGATTCAAA AGAAATCTTT GAATCCCTGC CTGTATCGGT CCGGGATTTA
TTAAAAGACA TGCCGGCAAC CTGGGATAAA ACGGAAAGTA TTGTAGCTCA ACCGGGTGAA
CAGATTATAC TCTCTCGTCA GAAAGACCGA CTTTCTTACA TTGTCGGAAT AAATGGTACG
GATAACGTAG TACCGGTTAA ACTGAATCTG GCCAGGTATG CAAAAGGCTT TTCTAAATTT
AGAATCATCA AGGAAGGCCA GGATCCATTG ATGACGTTTA AAACGGAAAC GTACCCAATT
ACGTCTACCT GGCAGTACAC GTTTGCTCCC AAAGGAGGCT TTATCATCCA GTTCATAAAT
GAGTAA
|
|---|
| Protein sequence | MRNRLAYKNL PFLIGAIFLF NSFKAASQSM SLSSKAGANK ITLSLTKNGE LHYQVTRRGK
PIITDSPLGL SCDEQNFTSG LSVVRVSPID VRREKYDLKV GNVKTINHVL ETKSVTFKNK
SGALMIIDLV TGDEGVAFRY RFPDQDRKIR VINNEITGFH IEKNARGWLQ PYNKAGKVTP
GYEDFYFNIH PGDSIRNPRN PSVGWCMPAL FQVNDSKNWV LLAESGTDGS YPGCHLQPDS
RGGLYKIAFA EKDEKYNLPL SENNHPTSSL PWAMPWRVII IGDQAGDILL STLITDLAPA
SKIDDTSWIE PGKATWSWWS HPEDHTPDMY NQFTDLAASF GFGYTLFDAG WEKANSEGGI
IAKATSRGVK PMVWGYSAAY FDPEKRRKRF KELADMGVKG VKIDFWCSDR QEVMACFPSL
FEDAAKEHLL INLHGTTVPR GWHRTWPNFM TAEAVLGTEH YFYESRYPDK AAEQNTVLPF
TRNVAGPTDY TPFALTIRKY PRLNTAVHEL ATAMIYTSGI IHFADSKEIF ESLPVSVRDL
LKDMPATWDK TESIVAQPGE QIILSRQKDR LSYIVGINGT DNVVPVKLNL ARYAKGFSKF
RIIKEGQDPL MTFKTETYPI TSTWQYTFAP KGGFIIQFIN E
|
|---|
| |