Gene Slin_2200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_2200 
Symbol 
ID8725938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp2666518 
End bp2668554 
Gene Length2037 bp 
Protein Length678 aa 
Translation table11 
GC content58% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003387021 
Protein GI284037091 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.541226 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.00764394 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCAAAAA AAGCTAACCA TACGAAGAGC CAAATCCTAC TAACCCAGCC AGTCGGCACG 
GGCTCACTAG AGAAGGGCTT TCTAACGGCT CATGAGCTGT GGGCCTTGAT TGAACCCCTT
GCCCAGGCCG TCTGGGAGAC CGATGCCAAC GGCCAGGTCA GAGTCGATTC GCCTACCTGG
CGCGCTTACA CGGGCCAGAG CCTAGGGGAT TGGCTGGGAG AAGGTTGGGG AAGCGCGGTG
CACCCCCATG ACCGGGACTA TGCCCTGAGT CAATGGCAGC AAGCCGTCCG CCACCGAACG
CCGGTCAACG CTGAATTTCG GATTGCCAGT CCCGATGGCT CCTGGCAATG GACCAACGTA
AGGGCCATAC CCGTGTACCA AGCCGACGGC ACCGTGGGGA AATGGATTGG CCTCAACCTG
GACATCCAAG ACCGCAAACG AGCCGAACAA ACGCGCCGTA AAAGTGAAGA AAGCCTTATG
GCAGCGGCTA TGGGCACCTA CGTGTGGTAC GTGGAGGAAG ATCGGGGGGA GCCCGATGAG
CAGATGCTTC AGCTGTTCGG CTTGCCACCT GAGGGGACGC TGAATTTGAC GGCGGCGCTC
AACTCGTTGA TTCACCCCCA GGATGTTCCC GCTTACATGC AGGCAGTCAA GCAGGCTGCC
GACCCTGTGG GAAACGGTCA ACTGCGGCAG GACATTCGGG TCATTCAGCC CAGCGGTCAG
ACCCGATGGC TTTCCATTCG GGGGCAAATG TTCTTTAGGG GCATGCCTCG CCAGGCGAAC
CGCCTGGTGG GATCGGCGAT TGACATCACC GACCGCAAGG TAGCCGAAGA AGCCCTGCGC
GAGTCAGAAA CGCAGTTTCG ACTCATGGCC GATACAATAC CCCAAATCAT TTGGTGGTTT
GATGCGGACG GACGGAATGA GTTCTTTAAT AAACCCTGGT ATCACTACAC CGGGGCCACC
AGCCAGCCCC TGACCGCTGA AGAAGTGACC CACCGCTTTA TCCATCCTCA GGACCGACCG
CTCACCCTGG CCGCTTTTGC GCAAGCCCGT CAACAGGGCC TTGCTTACCA GGTGGAGCAC
CGTATCCAGT CGGCCGCCGG GACGTATCGT TGGTTTCTGG TGCGGGCGGA GCCCTACCGG
GATCCGCAGA CGGGGGCCAT TACGCGCTGG TTTGGCGCCT CGGTCGATAT AGATGACCGT
AAACTGGCCG AAGAAGCCCT GCTTCACAGC GAAGCGGGCT ACCGTGAGCT GTCCACCAAA
CTGGAACAAC AGGTCCAACA GCGGACTCAG CAATTACAAG CGTCCGTTGT CGACTTGCAA
CGCTCCAACG AGAACTTACA GCAGTTTGCC TACGTGGCCA GTCACGACCT GCAGGAGCCC
CTGCGCAAGA TCCAGCAGTT TGGCGATTTG CTAAAGAGTC AGTATGCCCA GACGAGTGGT
GAGGCGTTGG TTTATTTGGA GCGGATGCAA TCGGCGGCCG CTCGCATGTC CGTATTGATC
AAAGCTCTGC TGAACTTTTC CCAGATTGCT AACCAGCAGG ATACTCGGAT ACCCGTCTCG
TTGGCGCAAG TGGTGAGAGA CGTTTTAAGC GATATAGACC TGCTTCGGAC GGAGACCCAA
GCCCGGATTG AGGTAGCACC CTTACCGGTG GTCGAGGGGG ACGCCCGGCA GTTAGGCCAA
TTATTTCAGA ATCTACTGGG CAATGCCCTC AAGTTTCGCC GTAGGGATAC GCCTCCGGTG
ATTCAGGTGA AGTCGGAACG GGTCATCAGG CATGAGCTAC CGGCGGGGGT CAAGCCTGCC
CGGCAGGTGG AGGCCTACTA CCAGATTGAG GTGATTGACA ATGGCATTGG CTTTGAGGAG
CAGTATGTGG ACCGCATCTT CCAAATCTTC CAGCGGCTGC ACGGCAAGAG CGCCTACGCG
GGTACGGGCA TTGGCCTGGC GATCTGTGAG AAGGTGGTGG CCAATCATGG GGGGGCGATT
ACGGCCACCA GCCAACCGGG TCAGGGCGCC ACCTTTACGA TTTACCTGCC TGCGTAG
 
Protein sequence
MPKKANHTKS QILLTQPVGT GSLEKGFLTA HELWALIEPL AQAVWETDAN GQVRVDSPTW 
RAYTGQSLGD WLGEGWGSAV HPHDRDYALS QWQQAVRHRT PVNAEFRIAS PDGSWQWTNV
RAIPVYQADG TVGKWIGLNL DIQDRKRAEQ TRRKSEESLM AAAMGTYVWY VEEDRGEPDE
QMLQLFGLPP EGTLNLTAAL NSLIHPQDVP AYMQAVKQAA DPVGNGQLRQ DIRVIQPSGQ
TRWLSIRGQM FFRGMPRQAN RLVGSAIDIT DRKVAEEALR ESETQFRLMA DTIPQIIWWF
DADGRNEFFN KPWYHYTGAT SQPLTAEEVT HRFIHPQDRP LTLAAFAQAR QQGLAYQVEH
RIQSAAGTYR WFLVRAEPYR DPQTGAITRW FGASVDIDDR KLAEEALLHS EAGYRELSTK
LEQQVQQRTQ QLQASVVDLQ RSNENLQQFA YVASHDLQEP LRKIQQFGDL LKSQYAQTSG
EALVYLERMQ SAAARMSVLI KALLNFSQIA NQQDTRIPVS LAQVVRDVLS DIDLLRTETQ
ARIEVAPLPV VEGDARQLGQ LFQNLLGNAL KFRRRDTPPV IQVKSERVIR HELPAGVKPA
RQVEAYYQIE VIDNGIGFEE QYVDRIFQIF QRLHGKSAYA GTGIGLAICE KVVANHGGAI
TATSQPGQGA TFTIYLPA