Gene Slin_1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_1872 
Symbol 
ID8725609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp2262723 
End bp2263928 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content51% 
IMG OID 
Producthypothetical protein 
Protein accessionYP_003386716 
Protein GI284036786 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.068493 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAA TATGCATAAC CGTTGGCGTA CTGCTTAGTC TATTGCGTTC GGGCCACGCT 
CAGTCCGTAG AAAAACCAGC TTACGAAGCC CGGAAGTTAA GTATACAGGA AGTGAATCTG
GTGTCGGGTT ACTATAACCA AAACGGGAAC AACTCAGCCG TTACGGGCGG TATTGGCTCC
GAACAGTTAA CCGACTTTGC TCAATCCATC GACCTGGTCC TGAAGAGTAC CGACCGGCGG
AATCGCCAGC ATACCCTGGC GTTTGACCTG AACATTGACC ACTATACTTC AGCCTCGTCG
GATAAGATCG ACCCGCTTAC GGTTTCGTCG GCCTCCAAAA GCGACACTCA CATTTATCCG
TCGGTTTCCT GGAGTGTGCA GAACAACGAC CGGCATACCA CGCATGGCGT CGCTCTCTCG
TATTCGACGG AGTATGATTA CAAATCGTAC GGAATCAACC TGAGCTTTGC GAAAGCCTCC
GCCGATAACA ACCGGGAGGT AAGTCTGAAA GCAGGGGCTT TTTTTGATAC TTGGGCAGTA
ATTTTGCCTG CTGAGCTTAG ACCGGAAGGC TATGGCTCCG GTGCTCACAG GGATCATGAT
CCCATTGATT ACAAGCCACG TAACTCGTAC AACGCCAGCC TATCGGTTTC GCAGATCATT
AACAAGCGGC TCCAGATATT GCTGACGGTA GAACCCGCGT TTCAGCAGGG TTTACTGAGC
ACGCCCTTTC ACCGGATTTA CTTTCAGGAC GGGGCAGAAA CGGTAGAACG ACTGCCGGGT
AGCCGCCTGA AACTACCCAT CGGTGTCCGG GTGCATTATT TCCTGGGCGA CCAGGTTATT
GTCCGGGCAT TCTATCGCTA TTACATTGAC GACTGGGGCA TGCAGGCACA TACGGTCAAC
CTCGAAACAC CCATTAAACT CACGTCTTTC ATCTCAATCA GCCCCTTTTA CCGATTCAGT
CATCAGACCG CCGTTCGGTA TTTCGCTCCT TATGGCGAGC ACCAGCTGAC GCAGAAGTAC
TACACGAGTG ATTATGACAT CTCTGGATTC AACAGTCAAT TTTTAGGGAC CGGTGTTCGA
ATGGCTCCAC CCAGTGGCTT GTTTGGAATT GGGCATTGGC AAAGCCTCGA ACTCCGCTAC
GGCCATTATG TACGCAGTAC TGGCATGGTT GCAAATAGCG TAACCCTGCT GGCTAAACTT
AAATAA
 
Protein sequence
MKKICITVGV LLSLLRSGHA QSVEKPAYEA RKLSIQEVNL VSGYYNQNGN NSAVTGGIGS 
EQLTDFAQSI DLVLKSTDRR NRQHTLAFDL NIDHYTSASS DKIDPLTVSS ASKSDTHIYP
SVSWSVQNND RHTTHGVALS YSTEYDYKSY GINLSFAKAS ADNNREVSLK AGAFFDTWAV
ILPAELRPEG YGSGAHRDHD PIDYKPRNSY NASLSVSQII NKRLQILLTV EPAFQQGLLS
TPFHRIYFQD GAETVERLPG SRLKLPIGVR VHYFLGDQVI VRAFYRYYID DWGMQAHTVN
LETPIKLTSF ISISPFYRFS HQTAVRYFAP YGEHQLTQKY YTSDYDISGF NSQFLGTGVR
MAPPSGLFGI GHWQSLELRY GHYVRSTGMV ANSVTLLAKL K