Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_1719 |
Symbol | |
ID | 8725456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 2064571 |
End bp | 2067339 |
Gene Length | 2769 bp |
Protein Length | 922 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | |
Product | glycoside hydrolase family 2 sugar binding protein |
Protein accession | YP_003386564 |
Protein GI | 284036634 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.149509 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGCTC TTTCAACCCG GAAATTCAAT TCCCGTCTTC TCCTTTGCGC GTTACTGCTT AGTATGGCAT GGACGACCGC TAAGGCACAA GCTGCAAAAA CTAGTTCTAG AGCAGCATCC GGTTCTCCCT TCGGTAAGGA ACGTATAAAG CTCAACGAAG GCTGGCGGTT TATGCGCTAT ACGATGGAGC CTGATAAACT GATCTATGAC GTTCGGCCAC CCATACAGGA TACCAACGAC AGCAAAGTAG CCGACTCAAA ACCTACAGAA GCCGTACAGG TAGACAAAAA GGAGGAAGTT CTGAAAACCT GGATTCTACC TTCGGGAAAT GACTTTATCA ACGACCCCGT CAAACGCCAT ACACGACCCG TCGGCGATCC CGGAGCCGAT TTCCCGTTCG TGAAAGCGAC CTTCGCCGAC GAGGCCTGGG AGGCTGTAAC CTTACCCCAC GACTGGGCTA TTAAAGGACC TTTTTACGCT GGCGACCGAC CCGAAGTGGG CGGAGGAATG GGCCGATTAC CCAGCCACGG GGTAGCCTGG TACCGGAACA AGATAGCCGT TTCGGCCGCA GACCGGGGTA AAATTATTTA TCTGGACATC GACGGAGCCA TGTCGCACGC TATGGTTTGG CTCAACGGCC ATTTGGTAGG TGGCTGGCCT TACGGCTATA ATTCCTTTCG GCTGGAACTA ACGCCACACC TAAATTTTGG AGGCATAAAT CAACTGGCGA TTCGGGTTGA TAACCCAAAT TACTCGGCCA GATGGTATCC CGGTGGAGGG CTGTATCGTA ACGTGTGGCT AACCAAAGTA GCCCCGGTGC ATGTGGCGCA GTGGGGAACG TTTGTGACAA CCCCCGCCGT TTCGGCAACC GAAGCGATCA TCAACGTATC CGTGCAGATT GAAAACAAAG GAAAAACGGA GCAGACCGTT GACGTAAAAA CCCAAATTTA TGCGCTGAAT ACGTACTCAA AACCAACTGG AGCTTCTCTG GCCTCGTTGC CCACCCAAAA AATTACGGTA AAGACGGGCG ACCATCAACC GATAGAGGGT AAAGTGACAA TCAAAAAACC AAAGCTATGG GGCCCCTACC CGACGCAGAA ACCCAACCTG TATGTAGCCC GTACAAGCGT TTTTGTTGGC GGTCGACAGG TTGACCAATT TGAGACCCCG TTTGGCATTC GCCAGGTGAA ATTCAATTCA ACAAAAGGAT TGCTGGTCAA TGGGCAGCCG GTTCGTATAC AGGGCGTGAA CCAGCACCAC GACCTGGGTG CCCTGGGAGC TGCATTTAAC GTTCGTGCCG CCGAACGCCA GCTCGAACGG CTGCGTGAGC TGGGTTGCAA TGCCATCCGA ATGGCCCACA ATCCACCCGC CCCCGAACTC CTCGACCTGA CCGACCGCAT GGGCTTTCTG GTCATCGATG AGATTTTTGA TAGCTGGGAG CGCCGGAAAA CACCCCACGA TTTTCACCTG ATTTTCCCCG ACTGGCACGA GCCGGACACG CGGGCGTTTA TTCGACGTGA CCGGAATCAC CCGTCCGTTA TCGCCTGGAG TTTTGGCAAC GAAGTAGGCG AGCAGTATAC CGACACCGCC GGAGCAGCCA TTGCGCGAAA ACTGCACGAC ATCGTACACG AAGAAGATCC CACCCGCCCA GCCTCAGCTT CGCAGAATTA CGCCAAGCCG GATATGCCGT TCACGAAGGT GATGGATTTT TTGAGTCTTA ATTATCAGGG TGAGGGCATC CGGGATGCAC CGGCTTATGC GCATTTGAAA GGCATTCGAA CCTCACCGCT TTACCCTGCC TTTCAGAAAG CGTTTCCCGA CAAACTTATT ATCAGCAGCG AAACAGCCTC AGCCCTAAGC ACCCGTGGTT CTTATACATT TCCGGTCGCG ACGGAAAACT CCGCCCCCGT AAGCGACGGC GTGGGTGGTA ACCCTGTCAC CAAAGAAGTG AGTGGCTATG AGTTGTACAC GGCCCAGTTT GGCGCTTCGC CGGATAAAGT TTTCGCGACC CAGGACCGCC ACCCGTACGT AGCCGGTGAA TTCGTCTGGA CGGGCTGGGA TTATCTCGGT GAGCCGACAC CCTATTACTC GGCCCGAAGT TCCTATTCGG GTATTATTGA TCTGGCGGGG TTCAAAAAAG ATCGTTTCTA TCTGTACCAG TCCCGCTGGC GACCGGATTT GCCAATTGCC CACATTCTGC CCCACTGGAA CTGGCCAAAC CGAGTCGGGG AAGTTACTCC GGTGCATGTG TTCACGTCGG GCGATGAAGC CGAACTGTTC CTGAACGGCC AGTCGCTGGG CCGGAAAAAG AAAGCCGAAT ATGCGTATCG GCTCCGGTGG GACGACGTGC AGTACAAACC CGGCGAACTC ACCGTCATCA CGTATAAAAA TGGAAAAAGG TGGGCTGAAG AACGTATAAG AACGACCGAT AAACCCGCAG CGCTGGTGGC TCAGGCAGAC CGATCAGCCA TACAGGCCAA TGGTGAAGAC CTGGCATTTG TGACGGTTAC CGTCACCGAC AAGAATGGCC TGATGGTGCC CGACGCCAAC AATACTGTGA GTTTTAGTTT ACAGGGACCG GGCGAAATCG TAGCCACCGA CAACGGCGAT CCGGCGAATC TGACTTCATT TTCTTCACAT GAGCGTCAGG CCTACAACGG CATGGTGCTG GCCATCATAC GAGCGAAAAA AGGTGCCCCC GGCAAATTGA CCCTAACAAT CAAAGCCGAG GGTTTGGCCA AAACCCAACT GAACATCCGA AGTAATTGA
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Protein sequence | MQALSTRKFN SRLLLCALLL SMAWTTAKAQ AAKTSSRAAS GSPFGKERIK LNEGWRFMRY TMEPDKLIYD VRPPIQDTND SKVADSKPTE AVQVDKKEEV LKTWILPSGN DFINDPVKRH TRPVGDPGAD FPFVKATFAD EAWEAVTLPH DWAIKGPFYA GDRPEVGGGM GRLPSHGVAW YRNKIAVSAA DRGKIIYLDI DGAMSHAMVW LNGHLVGGWP YGYNSFRLEL TPHLNFGGIN QLAIRVDNPN YSARWYPGGG LYRNVWLTKV APVHVAQWGT FVTTPAVSAT EAIINVSVQI ENKGKTEQTV DVKTQIYALN TYSKPTGASL ASLPTQKITV KTGDHQPIEG KVTIKKPKLW GPYPTQKPNL YVARTSVFVG GRQVDQFETP FGIRQVKFNS TKGLLVNGQP VRIQGVNQHH DLGALGAAFN VRAAERQLER LRELGCNAIR MAHNPPAPEL LDLTDRMGFL VIDEIFDSWE RRKTPHDFHL IFPDWHEPDT RAFIRRDRNH PSVIAWSFGN EVGEQYTDTA GAAIARKLHD IVHEEDPTRP ASASQNYAKP DMPFTKVMDF LSLNYQGEGI RDAPAYAHLK GIRTSPLYPA FQKAFPDKLI ISSETASALS TRGSYTFPVA TENSAPVSDG VGGNPVTKEV SGYELYTAQF GASPDKVFAT QDRHPYVAGE FVWTGWDYLG EPTPYYSARS SYSGIIDLAG FKKDRFYLYQ SRWRPDLPIA HILPHWNWPN RVGEVTPVHV FTSGDEAELF LNGQSLGRKK KAEYAYRLRW DDVQYKPGEL TVITYKNGKR WAEERIRTTD KPAALVAQAD RSAIQANGED LAFVTVTVTD KNGLMVPDAN NTVSFSLQGP GEIVATDNGD PANLTSFSSH ERQAYNGMVL AIIRAKKGAP GKLTLTIKAE GLAKTQLNIR SN
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