Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_1563 |
Symbol | |
ID | 8725297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 1878606 |
End bp | 1881854 |
Gene Length | 3249 bp |
Protein Length | 1082 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | glycosyl hydrolase, BNR repeat-containing protein |
Protein accession | YP_003386411 |
Protein GI | 284036481 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGAAACA CCCTACTTGT ACTTTACTCC GTTCTATTAA TCAGTCCATT ACTTGCTCAA AAGCCTAAAC TGGCCAAGCC CGTTTCTACC TCCAGTATCG AAGGAGCAGA AAACATCGAC CCCTACTTTA AGCCCGTCAA ATGGCGGAAC ATCGGCCCCT TTCGCGGAGG ACGCTCGGTG GCCGGGTCGG GCGTGACCAG CGACCCGCAA CTGTACTACA TGGGTACCGT GGGCGGGGGC ATCTGGAAAA CGGAAGACGC GGGCATGACC TGGAAAAACG TCTCCGACGG GCAGCTCAAA ACTTCATCTG TCGGAGCTAT CGGCATCTGC GAATCCGACC CGGCCGTTGT ATACGTCGGT ATGGGTGAAC ATGCACCCCG TGGCGTGATG ACCTCCTACG GCGATGGGGT CTATAAATCG ACCGATGCGG GGAAAACCTG GCAGCACCTT GGCCTCGACC TTACCCGCCA TATTGCCGCC GTTCGGGTGC ATCCGCAAAA TCCGGATGTA GCGTTTGTAG CCGCTCAGGG TGCCTTGCAT GGCTCCTCGG CTGATCGGGG AATTTACAAA ACGATCGATG GCGGTAAGTC CTGGAAGAAG GTGCTGTTCG TTGATGAAAA CACCGGCTGT AACGACCTAA GCATGGATAT GACCAACCCG CGTATTCTCT ACGCATCCAT GTGGGATTAC CGGCGATTGC CCTGGCAGGT GCAAAGTGGT GGTAAAGGCA GCGGCCTCTA CAAATCGACC GACGCGGGCG AAACCTGGAC AAAACTCGAA AAAGGGTTGC CTAAAGAACT CGGCAAAATG GGCATTTCGG TATCCAAAGC CAACCCGAAC CGGGTATACG CCGTCATTGA ATCAGACTCA AAGGCCGACA AAGGGGGCGT TTTCCTGTCC GAAGATGCCG GTAAAAGCTG GAACCGGGTG AGCAAAGACC ACCGCACCAT CCAGCGGGCC TGGTATTACA TCGAAATTTT CGCCGACCCG GTCGACGAAA ATACAGTCTA CGTCCTCAAT ACCTCAGTCC TGAAATCCAT CGACGGTGGC AAGACCTTCT CGACCATCCC CGGTTCGCAC GGCGATCATC ATCACCTTTG GATCAACCCA AAAAACAACA AGAACCTGTT TTTGAGTAAT GACGGGGGCG CTGCCGTTTC CTTCAACGGT GGCAAATCGT GGTCGTCGGA GAACAACCAG CCGACGGCGC AATTCTACCG CGTCAACGCC GATAACCGCT TTCCGTATTA TGTATATGGC GGTCAGCAGG ATAACACCTC GGTCATGATT GCGAGCCGAA GCACAAATGG CAGCGGCATT ACCGATAAAG ACTGGGAAGC CTCTGCCGGT GGCGAAAGTG CGTTCCTGGC CTTCAACCCC GACGACCCGC GTCATGTGAT GGGCGGCAGT TATCAGGGCA CTATCGAAGT GCTCGACCAG CAGACGCACG AAGGCAAGCC CATTATGGTG TCGCCGATTC AGTACCAGGC CTTGCAGGCA AAAACCATGA AGTACCGGTT CAACTGGAAC GCGCCCATCA TCTGGTCTAA GCACGAACCC AACGCCTTTT ACCATGCCGG TAACCGTCTG TTCAAAACCA CCGATCTTGG CAAAAGCTGG TCCATCGCGT CTCCCGACCT TACCCGCCAC GACTCTACGA AACTCGGCTG GGGCGGTGCA CCCTACACCA ACGAAGGGGC TGGTGGTGAA AACTACGCGA CCATCACCTA CGTCCTCGAA TCACCTTCCG AAAAAGGTGT AATCTGGACC GGCAGCGACG ACGGGCTGGT ATACCTGACC CGCGATGGCG GCACCACCTG GACCAACGTG ACGCCCAGCG GTTTACCCGA AACGCTCATC AACTCCATCG AGGTATCGCC CCACGACAAG GCGACGGCCT ACATTGCCAC CACGCGCTAC AAGTTCAACG ACTTTGCCCC GGCCATTTAT AAAACCACCG ATTACGGCAA AACCTGGACA AAAATTGTAA CGGGCATCCC CTACGGCGCC TTCACCCGAA CCGTCCGCGA AGACCCCGAA CGGAAAGGGT TATTGTATGC CGGCACCGAA ACGGGCGTTT ATGTATCGTA CAACGGCGGC ACCAGTTGGA GGCCCATGCA GCTAAACCTG CCCGTCAGCC CCGTTACCGA TCTAAAAGTG CATCAGGGCG ATCTGATTGC CGCCACAGCC GGACGTTCAT TTTGGATTCT GGACGACCTC GGCCCTATTC GACAGTTTGA CGATAAAGCC AGTAAAGATA GTTTACTGGT CTACAAACCC GAAGATGCCT ACCGGGTGTC AGGTGGCAGC GCGCTGGATA AGGTAATTGA AGATGACGAT GATGAAGACG CGGGCAGCAG CCCCGGCCGC AACGGATTCG CGGGTACCAA CCCTTCTACT GGTGTGGTTA TGTACTACCA ACTCCCAGCC AAGGTCGATA CCAGCGCCAT GCTCACGATG GAAATTCTGT CGGATCAGGG AGTTTCAGTC CGGAAGTTGA GCAGCAAGAA AGACAAGAAG TTTGTCGCCT TCCCCGGCGG TCCCTCGCCC GAGCCAACCC TGACAGTAAA GCCGGGTCTG AATCGGTTTG TCTGGGATAT GCGCGCCGAG ACATTACCCG CCATCGAAAA GGTGTTTATT GAAGGGAACT ACAAAGGGCG AAAGCTACCT CCCGGTGCGT ATAAAGCAAC GATCAAGTTT GGAAAGCAGG AAAAAACAGT ACCATTTAAA ATCCTGCCGG ACCCACGCCT GAATACCACA CCCGCCGATT ATGAGCAGCA GCAAAAAACG CTGATTGGTA TTGAAGACGG CGTGAAAGAG ATTCACCTTG GCGTGAACCG GATGCGCAAA GCCCAGAAGC AGATCAACGA CCTGGTCGAC CTGATCGACG ACAAACCCAA CCTGAAAGCC GTGGCCGATT CGGGACGGGC ACTGGCCAAG AAGATCAAGC TTTGGGAAGA GAAAGTTATT CAGCCCAAGT CGCAGTCGAA CGACGACGTG ATCAATTTCG AAAATAAGCT CAGCGCTGAC TACATCTTCC TGAAGGGAGA ACTGGACGTC AACACGCCCT ATGTAACAGC CGGACAGAAG GAGCGTTTGT CAGAGCTGAA CGCAATCTGG CAACCCCTGA AAACGGACAT GAACATGCTG ATTCAGAACG ACATTGCCCG GTTTAATAAT CAATGTCGGC AAGCGCAGCT AGAGAAAGTT ACGGTACCGG ATGTGGCCGT CTCGACGCCA AAGCAATAG
|
Protein sequence | MRNTLLVLYS VLLISPLLAQ KPKLAKPVST SSIEGAENID PYFKPVKWRN IGPFRGGRSV AGSGVTSDPQ LYYMGTVGGG IWKTEDAGMT WKNVSDGQLK TSSVGAIGIC ESDPAVVYVG MGEHAPRGVM TSYGDGVYKS TDAGKTWQHL GLDLTRHIAA VRVHPQNPDV AFVAAQGALH GSSADRGIYK TIDGGKSWKK VLFVDENTGC NDLSMDMTNP RILYASMWDY RRLPWQVQSG GKGSGLYKST DAGETWTKLE KGLPKELGKM GISVSKANPN RVYAVIESDS KADKGGVFLS EDAGKSWNRV SKDHRTIQRA WYYIEIFADP VDENTVYVLN TSVLKSIDGG KTFSTIPGSH GDHHHLWINP KNNKNLFLSN DGGAAVSFNG GKSWSSENNQ PTAQFYRVNA DNRFPYYVYG GQQDNTSVMI ASRSTNGSGI TDKDWEASAG GESAFLAFNP DDPRHVMGGS YQGTIEVLDQ QTHEGKPIMV SPIQYQALQA KTMKYRFNWN APIIWSKHEP NAFYHAGNRL FKTTDLGKSW SIASPDLTRH DSTKLGWGGA PYTNEGAGGE NYATITYVLE SPSEKGVIWT GSDDGLVYLT RDGGTTWTNV TPSGLPETLI NSIEVSPHDK ATAYIATTRY KFNDFAPAIY KTTDYGKTWT KIVTGIPYGA FTRTVREDPE RKGLLYAGTE TGVYVSYNGG TSWRPMQLNL PVSPVTDLKV HQGDLIAATA GRSFWILDDL GPIRQFDDKA SKDSLLVYKP EDAYRVSGGS ALDKVIEDDD DEDAGSSPGR NGFAGTNPST GVVMYYQLPA KVDTSAMLTM EILSDQGVSV RKLSSKKDKK FVAFPGGPSP EPTLTVKPGL NRFVWDMRAE TLPAIEKVFI EGNYKGRKLP PGAYKATIKF GKQEKTVPFK ILPDPRLNTT PADYEQQQKT LIGIEDGVKE IHLGVNRMRK AQKQINDLVD LIDDKPNLKA VADSGRALAK KIKLWEEKVI QPKSQSNDDV INFENKLSAD YIFLKGELDV NTPYVTAGQK ERLSELNAIW QPLKTDMNML IQNDIARFNN QCRQAQLEKV TVPDVAVSTP KQ
|
| |