Gene Slin_1563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_1563 
Symbol 
ID8725297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp1878606 
End bp1881854 
Gene Length3249 bp 
Protein Length1082 aa 
Translation table11 
GC content55% 
IMG OID 
Productglycosyl hydrolase, BNR repeat-containing protein 
Protein accessionYP_003386411 
Protein GI284036481 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAACA CCCTACTTGT ACTTTACTCC GTTCTATTAA TCAGTCCATT ACTTGCTCAA 
AAGCCTAAAC TGGCCAAGCC CGTTTCTACC TCCAGTATCG AAGGAGCAGA AAACATCGAC
CCCTACTTTA AGCCCGTCAA ATGGCGGAAC ATCGGCCCCT TTCGCGGAGG ACGCTCGGTG
GCCGGGTCGG GCGTGACCAG CGACCCGCAA CTGTACTACA TGGGTACCGT GGGCGGGGGC
ATCTGGAAAA CGGAAGACGC GGGCATGACC TGGAAAAACG TCTCCGACGG GCAGCTCAAA
ACTTCATCTG TCGGAGCTAT CGGCATCTGC GAATCCGACC CGGCCGTTGT ATACGTCGGT
ATGGGTGAAC ATGCACCCCG TGGCGTGATG ACCTCCTACG GCGATGGGGT CTATAAATCG
ACCGATGCGG GGAAAACCTG GCAGCACCTT GGCCTCGACC TTACCCGCCA TATTGCCGCC
GTTCGGGTGC ATCCGCAAAA TCCGGATGTA GCGTTTGTAG CCGCTCAGGG TGCCTTGCAT
GGCTCCTCGG CTGATCGGGG AATTTACAAA ACGATCGATG GCGGTAAGTC CTGGAAGAAG
GTGCTGTTCG TTGATGAAAA CACCGGCTGT AACGACCTAA GCATGGATAT GACCAACCCG
CGTATTCTCT ACGCATCCAT GTGGGATTAC CGGCGATTGC CCTGGCAGGT GCAAAGTGGT
GGTAAAGGCA GCGGCCTCTA CAAATCGACC GACGCGGGCG AAACCTGGAC AAAACTCGAA
AAAGGGTTGC CTAAAGAACT CGGCAAAATG GGCATTTCGG TATCCAAAGC CAACCCGAAC
CGGGTATACG CCGTCATTGA ATCAGACTCA AAGGCCGACA AAGGGGGCGT TTTCCTGTCC
GAAGATGCCG GTAAAAGCTG GAACCGGGTG AGCAAAGACC ACCGCACCAT CCAGCGGGCC
TGGTATTACA TCGAAATTTT CGCCGACCCG GTCGACGAAA ATACAGTCTA CGTCCTCAAT
ACCTCAGTCC TGAAATCCAT CGACGGTGGC AAGACCTTCT CGACCATCCC CGGTTCGCAC
GGCGATCATC ATCACCTTTG GATCAACCCA AAAAACAACA AGAACCTGTT TTTGAGTAAT
GACGGGGGCG CTGCCGTTTC CTTCAACGGT GGCAAATCGT GGTCGTCGGA GAACAACCAG
CCGACGGCGC AATTCTACCG CGTCAACGCC GATAACCGCT TTCCGTATTA TGTATATGGC
GGTCAGCAGG ATAACACCTC GGTCATGATT GCGAGCCGAA GCACAAATGG CAGCGGCATT
ACCGATAAAG ACTGGGAAGC CTCTGCCGGT GGCGAAAGTG CGTTCCTGGC CTTCAACCCC
GACGACCCGC GTCATGTGAT GGGCGGCAGT TATCAGGGCA CTATCGAAGT GCTCGACCAG
CAGACGCACG AAGGCAAGCC CATTATGGTG TCGCCGATTC AGTACCAGGC CTTGCAGGCA
AAAACCATGA AGTACCGGTT CAACTGGAAC GCGCCCATCA TCTGGTCTAA GCACGAACCC
AACGCCTTTT ACCATGCCGG TAACCGTCTG TTCAAAACCA CCGATCTTGG CAAAAGCTGG
TCCATCGCGT CTCCCGACCT TACCCGCCAC GACTCTACGA AACTCGGCTG GGGCGGTGCA
CCCTACACCA ACGAAGGGGC TGGTGGTGAA AACTACGCGA CCATCACCTA CGTCCTCGAA
TCACCTTCCG AAAAAGGTGT AATCTGGACC GGCAGCGACG ACGGGCTGGT ATACCTGACC
CGCGATGGCG GCACCACCTG GACCAACGTG ACGCCCAGCG GTTTACCCGA AACGCTCATC
AACTCCATCG AGGTATCGCC CCACGACAAG GCGACGGCCT ACATTGCCAC CACGCGCTAC
AAGTTCAACG ACTTTGCCCC GGCCATTTAT AAAACCACCG ATTACGGCAA AACCTGGACA
AAAATTGTAA CGGGCATCCC CTACGGCGCC TTCACCCGAA CCGTCCGCGA AGACCCCGAA
CGGAAAGGGT TATTGTATGC CGGCACCGAA ACGGGCGTTT ATGTATCGTA CAACGGCGGC
ACCAGTTGGA GGCCCATGCA GCTAAACCTG CCCGTCAGCC CCGTTACCGA TCTAAAAGTG
CATCAGGGCG ATCTGATTGC CGCCACAGCC GGACGTTCAT TTTGGATTCT GGACGACCTC
GGCCCTATTC GACAGTTTGA CGATAAAGCC AGTAAAGATA GTTTACTGGT CTACAAACCC
GAAGATGCCT ACCGGGTGTC AGGTGGCAGC GCGCTGGATA AGGTAATTGA AGATGACGAT
GATGAAGACG CGGGCAGCAG CCCCGGCCGC AACGGATTCG CGGGTACCAA CCCTTCTACT
GGTGTGGTTA TGTACTACCA ACTCCCAGCC AAGGTCGATA CCAGCGCCAT GCTCACGATG
GAAATTCTGT CGGATCAGGG AGTTTCAGTC CGGAAGTTGA GCAGCAAGAA AGACAAGAAG
TTTGTCGCCT TCCCCGGCGG TCCCTCGCCC GAGCCAACCC TGACAGTAAA GCCGGGTCTG
AATCGGTTTG TCTGGGATAT GCGCGCCGAG ACATTACCCG CCATCGAAAA GGTGTTTATT
GAAGGGAACT ACAAAGGGCG AAAGCTACCT CCCGGTGCGT ATAAAGCAAC GATCAAGTTT
GGAAAGCAGG AAAAAACAGT ACCATTTAAA ATCCTGCCGG ACCCACGCCT GAATACCACA
CCCGCCGATT ATGAGCAGCA GCAAAAAACG CTGATTGGTA TTGAAGACGG CGTGAAAGAG
ATTCACCTTG GCGTGAACCG GATGCGCAAA GCCCAGAAGC AGATCAACGA CCTGGTCGAC
CTGATCGACG ACAAACCCAA CCTGAAAGCC GTGGCCGATT CGGGACGGGC ACTGGCCAAG
AAGATCAAGC TTTGGGAAGA GAAAGTTATT CAGCCCAAGT CGCAGTCGAA CGACGACGTG
ATCAATTTCG AAAATAAGCT CAGCGCTGAC TACATCTTCC TGAAGGGAGA ACTGGACGTC
AACACGCCCT ATGTAACAGC CGGACAGAAG GAGCGTTTGT CAGAGCTGAA CGCAATCTGG
CAACCCCTGA AAACGGACAT GAACATGCTG ATTCAGAACG ACATTGCCCG GTTTAATAAT
CAATGTCGGC AAGCGCAGCT AGAGAAAGTT ACGGTACCGG ATGTGGCCGT CTCGACGCCA
AAGCAATAG
 
Protein sequence
MRNTLLVLYS VLLISPLLAQ KPKLAKPVST SSIEGAENID PYFKPVKWRN IGPFRGGRSV 
AGSGVTSDPQ LYYMGTVGGG IWKTEDAGMT WKNVSDGQLK TSSVGAIGIC ESDPAVVYVG
MGEHAPRGVM TSYGDGVYKS TDAGKTWQHL GLDLTRHIAA VRVHPQNPDV AFVAAQGALH
GSSADRGIYK TIDGGKSWKK VLFVDENTGC NDLSMDMTNP RILYASMWDY RRLPWQVQSG
GKGSGLYKST DAGETWTKLE KGLPKELGKM GISVSKANPN RVYAVIESDS KADKGGVFLS
EDAGKSWNRV SKDHRTIQRA WYYIEIFADP VDENTVYVLN TSVLKSIDGG KTFSTIPGSH
GDHHHLWINP KNNKNLFLSN DGGAAVSFNG GKSWSSENNQ PTAQFYRVNA DNRFPYYVYG
GQQDNTSVMI ASRSTNGSGI TDKDWEASAG GESAFLAFNP DDPRHVMGGS YQGTIEVLDQ
QTHEGKPIMV SPIQYQALQA KTMKYRFNWN APIIWSKHEP NAFYHAGNRL FKTTDLGKSW
SIASPDLTRH DSTKLGWGGA PYTNEGAGGE NYATITYVLE SPSEKGVIWT GSDDGLVYLT
RDGGTTWTNV TPSGLPETLI NSIEVSPHDK ATAYIATTRY KFNDFAPAIY KTTDYGKTWT
KIVTGIPYGA FTRTVREDPE RKGLLYAGTE TGVYVSYNGG TSWRPMQLNL PVSPVTDLKV
HQGDLIAATA GRSFWILDDL GPIRQFDDKA SKDSLLVYKP EDAYRVSGGS ALDKVIEDDD
DEDAGSSPGR NGFAGTNPST GVVMYYQLPA KVDTSAMLTM EILSDQGVSV RKLSSKKDKK
FVAFPGGPSP EPTLTVKPGL NRFVWDMRAE TLPAIEKVFI EGNYKGRKLP PGAYKATIKF
GKQEKTVPFK ILPDPRLNTT PADYEQQQKT LIGIEDGVKE IHLGVNRMRK AQKQINDLVD
LIDDKPNLKA VADSGRALAK KIKLWEEKVI QPKSQSNDDV INFENKLSAD YIFLKGELDV
NTPYVTAGQK ERLSELNAIW QPLKTDMNML IQNDIARFNN QCRQAQLEKV TVPDVAVSTP
KQ