Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_1538 |
Symbol | |
ID | 8725272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 1856463 |
End bp | 1857170 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | protocatechuate 3,4-dioxygenase, beta subunit |
Protein accession | YP_003386386 |
Protein GI | 284036456 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0431142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.14512 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAC TTATCTACAA TCACTTCGAT CGGGAGGTAC ACCCGCCTTA TCTGTCCCCG GAGTACAAAT CAACGGTGCT AAGGGCACCG TCAAAACCGC TGATTGTTAT TAAACAGTCG CTTTCGGAGC TGACCGGTCC GGTTTTCGGG GAAGCCCATG TCGGTCCGCT TGATCATGAT CTGACGAAAA ATTCCGTTCG AAACGGCGAA CCTCTGGGCG AACGGATCAT TGTGCATGGT AAGGTCATGG ACGAAAACGG GCGTCCCATT CCGCACACGC TGATCGAGAT CTGGCAGGCC AATTCGGCGG GTCGGTACGT GCATAAAGTT GACCAGCACG ACGCACCCAT TGACCCTAAT TTTCTGGGAA CGGGCCGCGT ACTAACCGAT GCCGACGGGC ACTACCGGTT TTATACCATA AAGCCGGGGG CGTATCCGTG GGGCAACCAT TACAACGCCT GGCGGCCCAA CCACATTCAC TTTTCGCTGT TCGGCCCGAA TATCACGACG CGTCTGGTTA CGCAGATGTA CTTTCCCGGC GACCCGCTGC TGGAGTATGA CCCGGTCTTT CTGGGCGTTC CCCCCAAAGG CCGGGAGTTG TTGATTTCGC AGTTCGACCT GAGCGTTACC GAACCCCATT TCGCCCTGGG CTACCGGTTC GATTTTGTGC TGAGAGGGCA CAACTCAACA CCATTTGAAA CGGCTTAA
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Protein sequence | MSELIYNHFD REVHPPYLSP EYKSTVLRAP SKPLIVIKQS LSELTGPVFG EAHVGPLDHD LTKNSVRNGE PLGERIIVHG KVMDENGRPI PHTLIEIWQA NSAGRYVHKV DQHDAPIDPN FLGTGRVLTD ADGHYRFYTI KPGAYPWGNH YNAWRPNHIH FSLFGPNITT RLVTQMYFPG DPLLEYDPVF LGVPPKGREL LISQFDLSVT EPHFALGYRF DFVLRGHNST PFETA
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