Gene Slin_1425 details

Gene Information

• Locus tag: Slin_1425
• ID: 8725159
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: -
• Start bp: 1734975
• End bp: 1738481
• Gene Length: 3507 bp
• Protein Length: 1168 aa
• Translation table: 11
• GC content: 53%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003386274
• Protein GI: 284036344

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.3493
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCATTCCA TTTTACTTAA CCGCAGTGTT TGGGTCAGGA TTATGAAAAT CACAAGTCTA 
CAAATCTTGC TTGTATTCGC CCTGGTCAAC ATCAGCTTTG CCTTCGACGG CAACGCACAG 
GAACTCTTAA GCCGAAGAGT CAGTATTTCG GCTCAGAATC AGGACGTTGA AACGGTCTTC 
AAACGAATTG AAAAACAGGC TAATGTTCAG TTTCTGTTCA GCCGGGAAAT CATTCAATCG 
AAGCGAAAGG TTACCTATCA GGCTAGCAAT GAGCAGCTCT CGCTACTGCT GGATCATATT 
TTAACACCCC TCAATTTAAG ATATGAGGTG ATTGGCCAAC AGATTCTGAT AAAGCGGGAA 
TCGACGCCCG CCACGCTTCC CCAGCAAAAT TCGACCAGCG AGCTTAGAAC CGAACAAGCG 
CAGGATGTAC AACTCACCGG GCGGGTTACG GGCGATAACG GCGAAGGGCT GCCGGGCGTA 
AACATTCAGA TAAAATCGAC CAATCGGGGC ACCACGACCG ACGTGAATGG CAATTACAAA 
CTGACCATTC CCCAGGCCGC AGGAACTACC CTGGTTTTTT CCTTCATCGG CTACGTAACG 
AAAGAGGTAG CCGTTGGTGC ACAGACAACC CTTAACGTTA CCCTGTCTAC CGACGACAAA 
ACCCTGAATG AGGTTGTCGT GGTGGGCTAT GGTACCCAGC GCAAACGGGA TGTGACGGGC 
TCGGTTGTGT CGGTCAATGA AGCGACGCTG AAAGAAGTGC CCGCTCCGAA CATCGTGAAC 
CAGTTGAAAG GCCGCGCGGC CGGGGTAACG ATTGTCAGCA ACGGGTCGAC ACCCGGTTCG 
CAGGGATCGA TTCGTATCCG TGGGAACCGG ACACTAACAA GCGGTCAGGG TTCGTCAAGT 
GATGGACTGG ACGGCCCGCT GGTGGTGGTC GATGGTATTC CCTACGGCGG TCTGAATGAC 
ATCAACCCCG ATGACATTGC CAATATGGAA ATCCTGAAAG ATGCTTCCGC TACTGCCATT 
TATGGATCAC GGGGCGCGGG TGGCGTTATT CTAATTACCA CCAAACGCGG TAAAGTCGGT 
AAACCTGTGT TTACCTACGA CGGCTATCAT GGCATTACGA CCATCATGGG CAAGTATAAT 
ATCATGAATG GCCCGGAGTA TGCCCAGTTC AAGCAGGAAG CTGCCAAGTA CAACCGCTCC 
GCTCCGGGAA CCACGGCCTA CCCGCTGACC ATCAAAGAGC AGGCAGCCCT GGACGCCGGT 
ATTTCGACAG ACTGGCAGGA TTTGATCTAC AAAGCCGGTT TCAATACCAA CCACCAGTTG 
GGTATGCAGG GTGGGACTGA CAATACGCAG TACTCGCTGG GCCTCGGCTA TTTCAACGAG 
ACGGGTATTA TCCCCAGCCA GAAATTCGAA CGGTATACCA TCCGCGCTAC TATCGACCAG 
CGCCTTGGGA AAAGCATCAA GATCGGTTTG AATACCCTGA ACACGCTGAC CTATACCAAC 
ACTCCCGGTG GTGGTGGCGT GCCGGGTGGC CTGGTTCGGT TAACCCCACT GGCGGCTCCT 
TATAATGCCG ATGGTACGGT AAATCTGTTT CCGTCGGAAG GATCGATCGA TGCGGCCGGT 
ATCAGTCCGC TGACCATTAT CACGAAGAAA GATGCGTATC TGGGCCGCAC ACGATCGATT 
AGAACGTTCA ATAGCCTGTA TGCCGAGGTG AACATTCTGC CGGGTCTGCG GTATCGGTTC 
AACGCCGGTC TGAACTTCAG CCAGTCGAAC TACAATGGCT ACGGTGGTCC GCTTACCTAT 
TTCAACTCGG CTACGGTTCA ATCGTCGTCC AATGCCGAGA TCAGCAATAC GGAGTACTGG 
GACATCAACC TCCAGCACCT GCTGTATTAC GACAAAACGT TTGGTAAGCA TAAACTGGGC 
TTTACAGGAC TTTACGAAGT GACCCAAAAC CACTCACTGG GAAGCCGGTT CACGGTGACC 
GGGGTGCCTG CCGACTATAT CAAAACGTCG AACTTCTCGC TGGCGTCGGG CCAGCCCGTA 
GCGAACTCGG ACTTTGGTAA CTCGTTTGCC GAAACGGGGC TGCTGTCTTA CATGGGCCGG 
ATCAATTATA GCTACGACAG CCGCTATCTG TTAACATTAA CCATGCGCCG GGACGGTTCG 
TCTACCTTAT CTCCGCAGAA TCGCTACTTT AACTACCCCG CCATTGGCGC GGGCTGGAAC 
ATTATCGACG AGCCTTTCAT GAAAAGTGTC CCTGCTATTT CGAACCTGAA ACTGCGGGGC 
GGCTGGGGAA TCTCCGGCAA CCGGAACGTA GGGGCGTACT CGACATTGGG TGCTCTGTCG 
GCGGGTTATT ACAACTTTGG TCTGGGAACG GCCGGCCAGC AACTGGCGTA TACGGTTACC 
AGCCTGCCCG CGTCGAATCT GGGCTGGCAG TCAACCTCGC AGGTCGATGT TGGGATTGAC 
TTCGGTTTCC TGAACAACCG GATCACGGGT ACGGTCGACT GGTATCTCCA GAAAACGAAA 
GACATTCTGC TGTCGGTGCC CCTCCCTCCC AGCAACGGTG CCGGTTCGAC CCTGAAAAAC 
CTGGGCCGAA CAGAGGGTCG GGGATTAGAA ACCTCGCTGA CGTTTGAGAT TATCAGAAAG 
CCCGGCGGGT TCAACTGGAG TGCCGACCTG ATCTACTTCT TTAACCGCGA AAAAATTACC 
CAGCTTACCA CCCCAACCGA ACTCTCCAAC ATAGGCGCGG GCTGGTTTGT AGGACAGCCC 
CTTTCGGTCA TCTACGACTA CAAGAAGATC GGTATCTGGC AAACCGCCGA TAAGGAAAGC 
GGAGCCTTGG CCAAACAAAC CTCGCCCGTA CAGTTCCCCG GTCAAATTCG GGTTGAAGAT 
GTAAATGGCG ACGGGAAAAT TGACCCCAGC GACCGGCAGA TCATCGGCAA CTTCCAGCCC 
AAGTGGGAAG GTGGCCTGAC CAACCGCTTT ACGTTCAAAA ACTTTGACGC GTCGATTGTA 
ACCTTCGCCC GGATGGGCAT GAAAGTGGTC GTGCCTTACC TGACGGGTAA CTCCACCGGT 
TCGGGCGGAT TTGCGTTCTT CAACCAGGGC CGGGTGAATC AGGTGAAAAC TGACTATTGG 
ACGGATACCA ACCCAACCAA CGCCTTCCCC GCACCCGATG CCGGTGGCGC TGTAGCTAAT 
TTTGGCTCAA CGCTGGGTTA CTACGACGGG TCGTTCGTCA AGATCAGAAG TATCAACCTT 
GGTTACACCT TCACCAGCCA GTTTATCAAA AAGATCGGTG GCAGTTCGGC CCGGATTTAC 
TTTAACGCTA CCAACCCGCT CATTCTGTAT TCGCCATTGG TACGCGACAA ACTGGCTATC 
GACCCGGAAG GGAATAGCTA CGCTAGTGGT CAGTCAACGC TCAATGACCA GTCGGGAAAC 
CGGGCAACCC CGGAGCGCCA GATCGCGGTA AACCTGAACA ACCCGCCGGT TCGGCAATTC 
ACCTTAGGCG TAAATCTTAA ATTCTAA 

 

Protein sequence

MHSILLNRSV WVRIMKITSL QILLVFALVN ISFAFDGNAQ ELLSRRVSIS AQNQDVETVF 
KRIEKQANVQ FLFSREIIQS KRKVTYQASN EQLSLLLDHI LTPLNLRYEV IGQQILIKRE 
STPATLPQQN STSELRTEQA QDVQLTGRVT GDNGEGLPGV NIQIKSTNRG TTTDVNGNYK 
LTIPQAAGTT LVFSFIGYVT KEVAVGAQTT LNVTLSTDDK TLNEVVVVGY GTQRKRDVTG 
SVVSVNEATL KEVPAPNIVN QLKGRAAGVT IVSNGSTPGS QGSIRIRGNR TLTSGQGSSS 
DGLDGPLVVV DGIPYGGLND INPDDIANME ILKDASATAI YGSRGAGGVI LITTKRGKVG 
KPVFTYDGYH GITTIMGKYN IMNGPEYAQF KQEAAKYNRS APGTTAYPLT IKEQAALDAG 
ISTDWQDLIY KAGFNTNHQL GMQGGTDNTQ YSLGLGYFNE TGIIPSQKFE RYTIRATIDQ 
RLGKSIKIGL NTLNTLTYTN TPGGGGVPGG LVRLTPLAAP YNADGTVNLF PSEGSIDAAG 
ISPLTIITKK DAYLGRTRSI RTFNSLYAEV NILPGLRYRF NAGLNFSQSN YNGYGGPLTY 
FNSATVQSSS NAEISNTEYW DINLQHLLYY DKTFGKHKLG FTGLYEVTQN HSLGSRFTVT 
GVPADYIKTS NFSLASGQPV ANSDFGNSFA ETGLLSYMGR INYSYDSRYL LTLTMRRDGS 
STLSPQNRYF NYPAIGAGWN IIDEPFMKSV PAISNLKLRG GWGISGNRNV GAYSTLGALS 
AGYYNFGLGT AGQQLAYTVT SLPASNLGWQ STSQVDVGID FGFLNNRITG TVDWYLQKTK 
DILLSVPLPP SNGAGSTLKN LGRTEGRGLE TSLTFEIIRK PGGFNWSADL IYFFNREKIT 
QLTTPTELSN IGAGWFVGQP LSVIYDYKKI GIWQTADKES GALAKQTSPV QFPGQIRVED 
VNGDGKIDPS DRQIIGNFQP KWEGGLTNRF TFKNFDASIV TFARMGMKVV VPYLTGNSTG 
SGGFAFFNQG RVNQVKTDYW TDTNPTNAFP APDAGGAVAN FGSTLGYYDG SFVKIRSINL 
GYTFTSQFIK KIGGSSARIY FNATNPLILY SPLVRDKLAI DPEGNSYASG QSTLNDQSGN 
RATPERQIAV NLNNPPVRQF TLGVNLKF