Gene Slin_1371 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_1371 
Symbol 
ID8725104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp1665931 
End bp1667685 
Gene Length1755 bp 
Protein Length584 aa 
Translation table11 
GC content53% 
IMG OID 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_003386220 
Protein GI284036290 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.122275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTC CTCAACTCAA AAAAGCCCCC CTTGTCTACG ACGTAGCTAT AGTCGGCTCA 
GGTGCAGGGG GCGGCATGGC TGCCTACATG CTCGCCAAAG CAGGCGCAAA AGTTGTTCTG
CTCGAAGCAG GTGGTTACTA TGACCCGGCC GATCCTAAGT ACATCACACA ACTGAAATGG
CCCTGGGAAT CACCCCGGCG TGGTGCCAGT ACCGAAGCTC GCTCCGGCGG TGATTTCGAT
GCAGCCTGGG GCGGCTGGGA AATAGACGGC GAGCCTTATT CGGCAAAGTC AGGTACAGAA
TTCGGCTGGT TCCGGTCGAG AATGCTCGGC GGACGTACCA ACCACTGGGG CCGTATCTCC
ATGCGCTTTG GCCCCGACGA TTTTCGGCGT CGGTCGCTGT CGGGTGTGGG CGACGACTGG
CCAATCACCT ACGACGACCT CAAGCCCTAT TACGATAAAG TAGACCGGCT CATTGGCGTC
TTTGGCTCGG TTGAAAACTT TCCGAATGAA CCCGATGGCA TTTTCCTCCC CCCTCCCAAG
CCACGCCTGC ACGAGTTAAT GATTCGAAAG GGCGCACGGA GCATTGGCAT TCCCGTTATT
CCATCCCGCT TAAGTATTCT GACCAAGCCC ATTAATAAAG ACCGGGGCTC CTGCTTCTAC
TGCCACCAGT GCAACCGGGG TTGTCAGGCT TATGCCGACT TCTCGGCATC GTCGGTCCTG
TGTATTCCGG CGGTTAAAAC GGGCAATGTA ACGCTCATCA ATGGAGCCAT GGTACGCGAA
GTACTCACCG ATCCGCAGAC GGGTCTGGCA ACAGGAATCA GCTACGTGAA TAAACATACT
TTGGAGGAAA TAACGGTTCG GGCAAAAGCT GTTATGCTGG GCGCAAGTAC CTGCGAATCG
GCACGGATTC TCCTGAATTC AAAATCCTCA CGTTTTCCGA ACGGACTGGC CAACAGCAGC
GGTGTGGTCG GAAAATACCT CAACGACTCA ACGGGTGCCA GCCGTTCGGC ATTCATCCCG
GCGCTTATGG ACCGCAAACG CTACAACGAA GATGGCGTAG GCGGTATGCA CGTGTTTACG
CCCTGGTGGC TCGATAATAA GAAGCTTGAT TTCCCCAGAG GCTATCACAT CGAGTACGGT
GGCGGCATGG GTATGCCCGG CTATGGCTTT GGCAGTGGCA TAGAATCGCT TAACGGCATG
ATTCCAGGTC GTGATGGTAA AACAAAAACG GCAGGTGGAT ACGGAGCTAG CCTGAAGGAT
GATTACCGAC GATTTTACGG AGCGTATATT GGCATGTCGG GTCGGGGCGA GCCTGTCCCT
CTCGAAAGCA ACTACTGCGA AATTGACCCG AATTCTGTCG ATAAATACGG GATTCCTACA
CTACGCTTCC ATTACAAATG GTCGGATTAC GAAGTGAAGC AGGCTAAACA CATGCAGGAC
ACCTTCGAGG AAATCATTCA TGCGATGGGC GGTATTGCGC TGGGTCCTAA ACCCGGTCCT
AATACAGCGC ATGGCTATGG TCTTGCCGCG CCTGGTCGTA TTATTCACGA AGTGGGTACC
GTTCGTATGG GAAATGACCC GCAAAAATCA GCGCTGAACA AATACCAGCA GGCACACGAT
GTGAAGAACC TATTTGTTGT CGATGCAGCA CCGTTCGTAT CGCAGGGTGA CAAAAACGTT
ACCTGGACTA TTCTGGCCAG TGCAATGCGT ACTTCCCAGT ATTATATTGA CATGGTGAAG
GCGAAAAGCA TTTAA
 
Protein sequence
MDIPQLKKAP LVYDVAIVGS GAGGGMAAYM LAKAGAKVVL LEAGGYYDPA DPKYITQLKW 
PWESPRRGAS TEARSGGDFD AAWGGWEIDG EPYSAKSGTE FGWFRSRMLG GRTNHWGRIS
MRFGPDDFRR RSLSGVGDDW PITYDDLKPY YDKVDRLIGV FGSVENFPNE PDGIFLPPPK
PRLHELMIRK GARSIGIPVI PSRLSILTKP INKDRGSCFY CHQCNRGCQA YADFSASSVL
CIPAVKTGNV TLINGAMVRE VLTDPQTGLA TGISYVNKHT LEEITVRAKA VMLGASTCES
ARILLNSKSS RFPNGLANSS GVVGKYLNDS TGASRSAFIP ALMDRKRYNE DGVGGMHVFT
PWWLDNKKLD FPRGYHIEYG GGMGMPGYGF GSGIESLNGM IPGRDGKTKT AGGYGASLKD
DYRRFYGAYI GMSGRGEPVP LESNYCEIDP NSVDKYGIPT LRFHYKWSDY EVKQAKHMQD
TFEEIIHAMG GIALGPKPGP NTAHGYGLAA PGRIIHEVGT VRMGNDPQKS ALNKYQQAHD
VKNLFVVDAA PFVSQGDKNV TWTILASAMR TSQYYIDMVK AKSI