| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1221 |
|---|
| Symbol | |
|---|
| ID | 8724954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 1486324 |
|---|
| End bp | 1487943 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003386070 |
|---|
| Protein GI | 284036140 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.711813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC ATATATCCTT CGGCGCGCTA CTGGTACTGT TGACGTACCT GTTTTCGGCC
TGTCATGATG TTAATGTACC CATTACGACC TCATTAACCC CCGATATTTT TCCGCAGAAT
ACAGCGCAGT TTATTCAGGC ATCGGGACCG CCTTATGCAG CTCTGCGCGG GAACTTCTCG
CTTGATTACT GGTTCATGCA ATCACTGAGC ACTGACGAAG CCATTCTGCC CGCCAGGGGT
GGAAACTGGT ACGATAACCA GGGCTACCGG ATGCTCCATT ACCACGACTG GACCAAAGAT
CACGGTACGA CAAACAGCAC CTGGAACTGG CTCTCGCTGG TGATCGGCAC AACCAACCAG
GCCATGTCGA TCCTGAACAC GACAATACCA GCCTCAACTC CCGGCAAAGC AATGAATCTG
GCCGAACTGA GAATGGTCCG CGCCCTGTCG TATTTTATGA TGATGGATTT ATATGGTAAC
GTACCCATCG ACACGACCTA CGGCGACTTT GCGCCACGCC CTAATACGCC CCGAGCGCAG
GTATTTTCGT TTATTGAGCG GGAAGTAAAA GCGGCTCTGC CCAATCTGAG CCGTGCGTCG
GGCCAGGCGA TTTATGGACG GGCCAATAAA TTCACTGGTT TTGCTCTGCT GGCCAAAATG
TACCTGAACT CGGAGTATTA CACCGGTACC CAGCGGTATA ATGATGCCAT TATCGCCTGC
GACAGCGTGA TCAATTCGGG CTTGTATGCC ATTGAACCCC GGTCAACGTA TCTGCAAATG
TTCTATCCGA ACAATGGCCC GCAGATGAAG GAATTCATTT TTGCCATTCC CTACGATCCG
GCGGCCGGGG CCTTGCCTGG TACGAACAGT AATATGTACC ATGCGCGCTA TGATGTGCCC
CGTTCGGAAA CAAAAAAGTT TGGCCTTCCC TTTACGCCCA GCGCTCCAAG AAGCACATTG
CCTGAGTTTT ATGCCAACTT CAAAGATCCG AACGACATTC GAAATAACCA GTGGTTAACG
GGTCTGCAAT TTATGAACGA TGGCGTAACG CCCGTTACCG TGACGACGAC CAAAAAAGGG
TACGACCAGT TCTATACGGG CTCTGATGGG TCGGCGCCCT ACACGTACCA GGTGAACCTG
ACGCCTGATG TTGTATTGCG TCAGGATGTG GCCACGTACG ATTGCGGAAA CGACGAAATT
GCCTGGAATA TGGGCTACCG GAACATAAAG TTCTATCCTG ATGGTACGTC GACCTCACGT
AACCAAAACA ATGACGTACC CCTGTTCCGA TATTCCGATA TCATTCTGAT GAAAGCTGAA
GCCATTCTTC GCGGAGGTGC GCCGACAGGA GGGCAAACGG CTCTCTCATT GGTGAATCAG
TTGCGATCAA ACCGGACGAC ATCGCCTGCT TTAACCAGCG TGACGCTGGA GGATATTTAC
GCGGAACGTT GCCGCGAATT TACCTGGGAA ACCTGGCACC GGAACGACAT GATCCGGTTC
GGCAAGTTTG AGGGCAAATG GGGCTTTAAA ACCGATGCCA GCGTAAACAA GCGGATCTTC
CCAATTCCAA CAGGAGCATT CACGGTCAAC CCGTCGCTAG TACAGAATCC GGGGTATTAA
|
|---|
| Protein sequence | MKKHISFGAL LVLLTYLFSA CHDVNVPITT SLTPDIFPQN TAQFIQASGP PYAALRGNFS
LDYWFMQSLS TDEAILPARG GNWYDNQGYR MLHYHDWTKD HGTTNSTWNW LSLVIGTTNQ
AMSILNTTIP ASTPGKAMNL AELRMVRALS YFMMMDLYGN VPIDTTYGDF APRPNTPRAQ
VFSFIEREVK AALPNLSRAS GQAIYGRANK FTGFALLAKM YLNSEYYTGT QRYNDAIIAC
DSVINSGLYA IEPRSTYLQM FYPNNGPQMK EFIFAIPYDP AAGALPGTNS NMYHARYDVP
RSETKKFGLP FTPSAPRSTL PEFYANFKDP NDIRNNQWLT GLQFMNDGVT PVTVTTTKKG
YDQFYTGSDG SAPYTYQVNL TPDVVLRQDV ATYDCGNDEI AWNMGYRNIK FYPDGTSTSR
NQNNDVPLFR YSDIILMKAE AILRGGAPTG GQTALSLVNQ LRSNRTTSPA LTSVTLEDIY
AERCREFTWE TWHRNDMIRF GKFEGKWGFK TDASVNKRIF PIPTGAFTVN PSLVQNPGY
|
|---|
| |