| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1189 |
|---|
| Symbol | |
|---|
| ID | 8724922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 1449076 |
|---|
| End bp | 1450617 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF1501 |
|---|
| Protein accession | YP_003386039 |
|---|
| Protein GI | 284036109 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.605021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA AGGAGTTTCT ACGACAATTA AGTTTACTAA CCAGTGGTGT TGCCTTTGGT
GTACAGGGTG TACCTGTTCG GACCTATGCG CATAACCCAT TCATGGTAGA CATGGCGGGC
ACCAACGGAA ATATATTAGT GCTGGTGCAA TTGCAGGGTG GAAATGATGG GCTCAACACG
GTTGTACCCT ATGAAAATAG TAGTTATTAC CAAAAGCGTC CGACTATCGC TATTCCCAAA
GCGGGTGTGT TACCCTTAAC CAGTCAGCTT GGCTTAAATC CGGCAATGAG CTCGTTTCGT
GAATTGTACG ACAATGCTCA GTTAACGATT GTTGAAAATG TTGGTTATCA ATCGCCCAAC
AGGTCGCACT TTCGATCAAC GGATATATGG TTATCAGGCT CCGATGCTGA GACGCTGGAA
TACGACGGCT GGGTGGGCCG GTATCTGGCC CATAAATTTC CAGATTATCC CGTGGCACTG
CCGGAGCAGC CACTGGCTAT TCAACTGGGT TCTGTAGAGT CGATGCTCCT GCAAAGCCCG
GTGGGGTCTA TGGCTACGGT GTTCGAAAGC CCCGATACGT TTTATCAACT GGTGCAGGGG
AGCAGTGCCG AGTCGGCGTC TGTTCCCAAT ACGGTGGCTG GCGAAGAGCT TAAATTTTTA
CAGCAAATGG CTGCCCAATC CATTCAGTAT TCCGATATCA TCAAGAAAAA GGCAGACAGT
GGAAAAAATG TCGTGGGCTA TCCCAATACG AGCCTGGGAA AGCAATTGGC TATTGTGGCC
GATTTAATTT CCGGAGGGCT CACAACGCCG GTTTACCTAA CGACTCTGGG GGGATTTGAT
ACCCACGCCA ATCAGGTAGT GGCCGGTAAT GTAACAACCG GCCAGCACGC CAATCTGCTT
AAAACAGTAG CCGATGCGGT GGCTGCATTC ACGAAGGATT TAAAGAGGCA GAATCTGGCA
AACCGGGTAA CAGTTATGAC ATTTTCTGAG TTTGGCCGGC GCGTCAATCA GAACGGAACA
ACGGGTACCG ATCATGGTAC GGCGGCCCCG CTTTTTGTCG TTGGTAATTC GGTACGCGGT
GGGATAGTAG GCACGCCACC CGATCTAAAT GATCTCGACA GTAACGGCGA TCTGAGATTT
AAACATGATT TCAGGCAGGT TTACGCCAGT GTTCTTCGCG ACCATCTTGG CGTTGATGCG
GCCAATACAA AGACGATTCT GGGGCGCGAT TTTGAGACTT TACCAATTTT TCGCCAGAAT
TCGGCGCTGG AGGTTACTGA AGGTTTCTTT GCGTTAGGGC AGAATACCCC CAATCCCTTT
GCCAATTATA CCGACATTCA GTTTACCCTG AAACAGGCTA GTAACGCACG GTTAGTCGTA
TATGACCTCA CAGGGCGTGA GGTACTTGTG CTCCGGGAAA GTCGATTTGA TGTTGGTAAT
TATACTATTC CTCTCTCTGG GACTAGCCTG GCTGCCGGGC AGTACCTGTA CAGCCTGCAA
ACCGATTTTG GGCGACAGGT AAGGCGTATG GCGAAAGTGT AA
|
|---|
| Protein sequence | MKRKEFLRQL SLLTSGVAFG VQGVPVRTYA HNPFMVDMAG TNGNILVLVQ LQGGNDGLNT
VVPYENSSYY QKRPTIAIPK AGVLPLTSQL GLNPAMSSFR ELYDNAQLTI VENVGYQSPN
RSHFRSTDIW LSGSDAETLE YDGWVGRYLA HKFPDYPVAL PEQPLAIQLG SVESMLLQSP
VGSMATVFES PDTFYQLVQG SSAESASVPN TVAGEELKFL QQMAAQSIQY SDIIKKKADS
GKNVVGYPNT SLGKQLAIVA DLISGGLTTP VYLTTLGGFD THANQVVAGN VTTGQHANLL
KTVADAVAAF TKDLKRQNLA NRVTVMTFSE FGRRVNQNGT TGTDHGTAAP LFVVGNSVRG
GIVGTPPDLN DLDSNGDLRF KHDFRQVYAS VLRDHLGVDA ANTKTILGRD FETLPIFRQN
SALEVTEGFF ALGQNTPNPF ANYTDIQFTL KQASNARLVV YDLTGREVLV LRESRFDVGN
YTIPLSGTSL AAGQYLYSLQ TDFGRQVRRM AKV
|
|---|
| |