Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_1178 |
Symbol | |
ID | 8724911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 1436865 |
End bp | 1440383 |
Gene Length | 3519 bp |
Protein Length | 1172 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_003386028 |
Protein GI | 284036098 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGCTG ATTTACCAAC GAAACTTTCT TTGGCTCAAG TTTTTGATAC GTTACCCGAT AGTGTGTTTT GGATGCGTGC CGTGCGGGCA ACTGAAAAAA ACACTGACAG TCTGGTACGT GGAACTGTAG ACCCGGCTGC TGGTCAGCTA GTCGACTTTG TCGTTGAGTA TGTCAATCCA CGTGTTAGCG AATTGTTTAC GGGTGAAGCT CAGGTAGAGG TTGGTTTATC CGTTCGGTCT GGAGGCTATT GGCATTCGGA CTTTACAGAG GATGTATTTC AGCAACTCTG CCACATCATG GAAACAGGGC AGTCCATGGA GATGGAGTAT TTCAATCCTG TGCTCAGGCA GTGGCTTTGT GTAACCCGGT CTAAAGCAGG TGATGGTGTT TTGGGAATTG TCCGAACGAT TACTACCCCC AAAGAAGTGG TTTTGGAAAC GGAACGCCAG CGATTACTGC TGGATAGTAT CCTCAATACA TCCCTTAGTA CGGTATTTGT TTACGAAGCC ATCCGCGATC AGAACAACGA GATTCAGGAC TTCAGTTTAC GCATGGTTAA TAAACAGGGC CAGATAGAGG CTCAAATCCA TGCCGGGTTC GATGTGGTTG GTAAAACCTT GTTGACCATA AACCCCAATT CGCGACAGTC AGGTCAGTTC AACCTCTTTA AACAAGTGAT TGAATCAGGC AAGCCTATTG AGGTTGAACA GTACTATGCA TTTGCGGATG TTTGGTATAA CACGTCCATC ACCAAATTGA ACGATGGGGT TGTGGTCATG GGATATAATA TCACCCATCA GAAGATAGCG GCTCTGGAGA CGGAACGACA GCGAACGTTA CTGAATGAAA TTATCAATAT ATCGCAGGAT ACCATTCTTG TGCTGGAGTC GATCCGGGAT TCGACCGGAG CAATTTCTGA TTTTCGGTTT ACCCACGCCA ACCCTGCGGT AAAATCTCTA TTAGGGCAGT CTATCGAGAC GCTGCTTCAA CGGACGTTTC TGTCCTTTTA CCCGGGTGCA CAAGAAGAAG GATTGTTCAG GATCTATCAG CAGGTTGTCG AAACCGGCGA AGCCTACCAG GGCGAACACT TTTATAATCG GGATGGCCTG AACAACTGGT TTGATATTTC AGCGGTGAAG CATGGAGACG GTCTTGTGCT CACGGTAACC AATCTTACCA AGGCCCGGCT CGCCGAACAG GCTATTGTTC AGTCGGCAGC TAATTTGCAG GCCGTTATTG ATGTAGCCCA AACGGGTATT CTGGTTATCA GTCCGGTTCT GAACCCGGCG GGAGAACTGA TTGATTTTCG CTTTAAGACC ATTAACCGCG TGATGGCGGC ACTCATTGGG CAGACGCCTG ATAAGCTAAC GGGAGCTATT ATGTCGGACT GGTTTACCCA GTACCGGGAA ATGGGCCTGT TCGAACGCTA TCGGTACACC TTCGAAACCG GAGAAAAGAA ACGATTCGAA CTGAATTACG CTGTCGATCA TCAGAACATC TGGTTCGACG TAAAAGTGAT CAGGTTTGAG GGGGATTTGC TGGTTACGTT TACCGATTAC ACAACCCTGA AGCAAACCCA GCAAACCCTC GAACAAACGG CCATAAAGGC CGGTCGTCAG GCAGAGTTGC TCAATAGTGT ACTGGATAGT TCAAACAGCG GAGTAATTGC GTTTGAAGCC ATTCGGGATG AGACACATAC GATCGTCGAT TTTCGGTTTT TGGTTGCTAA CCAAAGCTCG ACCGGTATGC TTAGCAGAAG CCAGGAAGAA ATGATCGGGA ATACCCTGCT GACAATTTTT CCGGGGAATG TAGAGAGCGG TCTGTTTGAC CTGTACAGGC GAACGACCGA AACCGGTGAG CCGGGCTATA CGGAGGTGTA TTATAACCAC GACGGGCTGG ATTTCTGGCT CGATATATCG GCTCAAAAGC TTGGCGATGG TTTTGTTGTC ACGTTCACCG ATGTAACGGC GGCCAAACGG TCGGGTATAT TGATCGAAAA GTCGGCGGCC GAACTCCGTA CAGTCATCGA TTCGGCACAG GTCGCTATTT TCCTGATCCA TCCGGTGTTC AACGACGTTG GCCGGATTGT TGACTTTCGA TTTCGAACGG CCAATCAAAT GGTTGCCGGT TATGTAGGGC AGGAGCCGGA CGCGCTGATG GAGGAGTTGG TAAGCCGTTG GTTTCCGGAA TACATGACCA ACGGGCTGTT TATGCGGTAT GTTGCCATTT TTGAAACCGG ACGCACCCAG CATTTCAACT TTCACTACGA AACAGAAACA AACGATTTCT GGGAAAGCTA TACGGTATTG AAGCTTGGCC AGGATGTGCT GGTTACGTTC TCCGACTACA CCGAACTCAA AAAATTACAG CAGCGGTTAG AGTCTTCCGC TACCGAACTG CAAACTGTTA TTGACACCTG CCAGACCGGA ATTTTTCTGT TCACGCCCGT TCGAGACCTG GCTGGTGAGG TACACGACTT TCGGTTCAGA CTTGCCAATC AGCAGCTGGC ATCTTATGTG GGTGAAGAAT CGGAAGCCCT AATCGGAGCC TTGGGGAGCA CATACTTTCC TGATTACAAG ACGAACGGGT TATTTGAGCG GTATTACAAA ACATACAGCA CCGGCCTGTC GCAGCGGTTC GACTTCCATT ATTTTGGCAG TGGCATTGAT GTCTGGCTGG ACATTATGAC CACCAAAATG AATGATGATG TGCTGGTGAC TTTTGGCGAC TATACACCTC TCAAGCGGCT TCAGCAGGAG CTGGAGAACT CGGTAGTTGA ATTACAGCGT TCGAACAAAA ATCTGGAGCA GTTTGCCTAC GTAGCGAGTC ATGACCTACA GGAACCACTG CGTAAAATTC AGGCGTTTGG CGATCTTATC CAGTCGCAGT TTGCGCCGGT AATCGGTATC GAAGGCGCCG ATATGATCAA CCGGATGCAG TCGGCGGCTG CCCGAATGCA GATTCTGATC AAAGATGTTC TGGCTTATTC CCGCATTGTA ACGAAGCAGG AAACCGTTGG CCCGGTTAAT TTGAATCAGG TGGTAGCTGA TGTACTCATT GATCTGGAAA CGGCCATTGC TGAGAAAAAA GCGGTGATCA CCGTGGATGC TCTGCCAACT ATCCGGGGTG ATGCGGCCCA GCTACGTCAG CTTTTTCAAA ATCTGGTTAG TAACGCCCTC AAATTTACCC GGCTGAACGA TGCGGATGAA CTGCCGACAA TCCATATCAA CGCCCGTCAG CTCTACGGGC GCGAACTGAC CGAACCCTCG CTGCTTCCCG CGGATGGCAA TCGATTGTTT CACCTTATCC AGGTAACCGA TAATGGAATC GGGTTCGACC CGCACCAGGC CGATCGGATC TTTCAAGTAT TTCAGCGCCT TCATGGCCGC AGTGAATACC AGGGAACAGG CATTGGGCTT GCCATTGTAC AGAAAGTAAT CGATAATCAC CAGGGGCATA TCTTTGCTGA AGGACGACCG GGCCAGGGAG CTACGTTCCG GATTCTTTTG CCTGTTTAA
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Protein sequence | MLADLPTKLS LAQVFDTLPD SVFWMRAVRA TEKNTDSLVR GTVDPAAGQL VDFVVEYVNP RVSELFTGEA QVEVGLSVRS GGYWHSDFTE DVFQQLCHIM ETGQSMEMEY FNPVLRQWLC VTRSKAGDGV LGIVRTITTP KEVVLETERQ RLLLDSILNT SLSTVFVYEA IRDQNNEIQD FSLRMVNKQG QIEAQIHAGF DVVGKTLLTI NPNSRQSGQF NLFKQVIESG KPIEVEQYYA FADVWYNTSI TKLNDGVVVM GYNITHQKIA ALETERQRTL LNEIINISQD TILVLESIRD STGAISDFRF THANPAVKSL LGQSIETLLQ RTFLSFYPGA QEEGLFRIYQ QVVETGEAYQ GEHFYNRDGL NNWFDISAVK HGDGLVLTVT NLTKARLAEQ AIVQSAANLQ AVIDVAQTGI LVISPVLNPA GELIDFRFKT INRVMAALIG QTPDKLTGAI MSDWFTQYRE MGLFERYRYT FETGEKKRFE LNYAVDHQNI WFDVKVIRFE GDLLVTFTDY TTLKQTQQTL EQTAIKAGRQ AELLNSVLDS SNSGVIAFEA IRDETHTIVD FRFLVANQSS TGMLSRSQEE MIGNTLLTIF PGNVESGLFD LYRRTTETGE PGYTEVYYNH DGLDFWLDIS AQKLGDGFVV TFTDVTAAKR SGILIEKSAA ELRTVIDSAQ VAIFLIHPVF NDVGRIVDFR FRTANQMVAG YVGQEPDALM EELVSRWFPE YMTNGLFMRY VAIFETGRTQ HFNFHYETET NDFWESYTVL KLGQDVLVTF SDYTELKKLQ QRLESSATEL QTVIDTCQTG IFLFTPVRDL AGEVHDFRFR LANQQLASYV GEESEALIGA LGSTYFPDYK TNGLFERYYK TYSTGLSQRF DFHYFGSGID VWLDIMTTKM NDDVLVTFGD YTPLKRLQQE LENSVVELQR SNKNLEQFAY VASHDLQEPL RKIQAFGDLI QSQFAPVIGI EGADMINRMQ SAAARMQILI KDVLAYSRIV TKQETVGPVN LNQVVADVLI DLETAIAEKK AVITVDALPT IRGDAAQLRQ LFQNLVSNAL KFTRLNDADE LPTIHINARQ LYGRELTEPS LLPADGNRLF HLIQVTDNGI GFDPHQADRI FQVFQRLHGR SEYQGTGIGL AIVQKVIDNH QGHIFAEGRP GQGATFRILL PV
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