Gene Slin_1178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_1178 
Symbol 
ID8724911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp1436865 
End bp1440383 
Gene Length3519 bp 
Protein Length1172 aa 
Translation table11 
GC content49% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003386028 
Protein GI284036098 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGCTG ATTTACCAAC GAAACTTTCT TTGGCTCAAG TTTTTGATAC GTTACCCGAT 
AGTGTGTTTT GGATGCGTGC CGTGCGGGCA ACTGAAAAAA ACACTGACAG TCTGGTACGT
GGAACTGTAG ACCCGGCTGC TGGTCAGCTA GTCGACTTTG TCGTTGAGTA TGTCAATCCA
CGTGTTAGCG AATTGTTTAC GGGTGAAGCT CAGGTAGAGG TTGGTTTATC CGTTCGGTCT
GGAGGCTATT GGCATTCGGA CTTTACAGAG GATGTATTTC AGCAACTCTG CCACATCATG
GAAACAGGGC AGTCCATGGA GATGGAGTAT TTCAATCCTG TGCTCAGGCA GTGGCTTTGT
GTAACCCGGT CTAAAGCAGG TGATGGTGTT TTGGGAATTG TCCGAACGAT TACTACCCCC
AAAGAAGTGG TTTTGGAAAC GGAACGCCAG CGATTACTGC TGGATAGTAT CCTCAATACA
TCCCTTAGTA CGGTATTTGT TTACGAAGCC ATCCGCGATC AGAACAACGA GATTCAGGAC
TTCAGTTTAC GCATGGTTAA TAAACAGGGC CAGATAGAGG CTCAAATCCA TGCCGGGTTC
GATGTGGTTG GTAAAACCTT GTTGACCATA AACCCCAATT CGCGACAGTC AGGTCAGTTC
AACCTCTTTA AACAAGTGAT TGAATCAGGC AAGCCTATTG AGGTTGAACA GTACTATGCA
TTTGCGGATG TTTGGTATAA CACGTCCATC ACCAAATTGA ACGATGGGGT TGTGGTCATG
GGATATAATA TCACCCATCA GAAGATAGCG GCTCTGGAGA CGGAACGACA GCGAACGTTA
CTGAATGAAA TTATCAATAT ATCGCAGGAT ACCATTCTTG TGCTGGAGTC GATCCGGGAT
TCGACCGGAG CAATTTCTGA TTTTCGGTTT ACCCACGCCA ACCCTGCGGT AAAATCTCTA
TTAGGGCAGT CTATCGAGAC GCTGCTTCAA CGGACGTTTC TGTCCTTTTA CCCGGGTGCA
CAAGAAGAAG GATTGTTCAG GATCTATCAG CAGGTTGTCG AAACCGGCGA AGCCTACCAG
GGCGAACACT TTTATAATCG GGATGGCCTG AACAACTGGT TTGATATTTC AGCGGTGAAG
CATGGAGACG GTCTTGTGCT CACGGTAACC AATCTTACCA AGGCCCGGCT CGCCGAACAG
GCTATTGTTC AGTCGGCAGC TAATTTGCAG GCCGTTATTG ATGTAGCCCA AACGGGTATT
CTGGTTATCA GTCCGGTTCT GAACCCGGCG GGAGAACTGA TTGATTTTCG CTTTAAGACC
ATTAACCGCG TGATGGCGGC ACTCATTGGG CAGACGCCTG ATAAGCTAAC GGGAGCTATT
ATGTCGGACT GGTTTACCCA GTACCGGGAA ATGGGCCTGT TCGAACGCTA TCGGTACACC
TTCGAAACCG GAGAAAAGAA ACGATTCGAA CTGAATTACG CTGTCGATCA TCAGAACATC
TGGTTCGACG TAAAAGTGAT CAGGTTTGAG GGGGATTTGC TGGTTACGTT TACCGATTAC
ACAACCCTGA AGCAAACCCA GCAAACCCTC GAACAAACGG CCATAAAGGC CGGTCGTCAG
GCAGAGTTGC TCAATAGTGT ACTGGATAGT TCAAACAGCG GAGTAATTGC GTTTGAAGCC
ATTCGGGATG AGACACATAC GATCGTCGAT TTTCGGTTTT TGGTTGCTAA CCAAAGCTCG
ACCGGTATGC TTAGCAGAAG CCAGGAAGAA ATGATCGGGA ATACCCTGCT GACAATTTTT
CCGGGGAATG TAGAGAGCGG TCTGTTTGAC CTGTACAGGC GAACGACCGA AACCGGTGAG
CCGGGCTATA CGGAGGTGTA TTATAACCAC GACGGGCTGG ATTTCTGGCT CGATATATCG
GCTCAAAAGC TTGGCGATGG TTTTGTTGTC ACGTTCACCG ATGTAACGGC GGCCAAACGG
TCGGGTATAT TGATCGAAAA GTCGGCGGCC GAACTCCGTA CAGTCATCGA TTCGGCACAG
GTCGCTATTT TCCTGATCCA TCCGGTGTTC AACGACGTTG GCCGGATTGT TGACTTTCGA
TTTCGAACGG CCAATCAAAT GGTTGCCGGT TATGTAGGGC AGGAGCCGGA CGCGCTGATG
GAGGAGTTGG TAAGCCGTTG GTTTCCGGAA TACATGACCA ACGGGCTGTT TATGCGGTAT
GTTGCCATTT TTGAAACCGG ACGCACCCAG CATTTCAACT TTCACTACGA AACAGAAACA
AACGATTTCT GGGAAAGCTA TACGGTATTG AAGCTTGGCC AGGATGTGCT GGTTACGTTC
TCCGACTACA CCGAACTCAA AAAATTACAG CAGCGGTTAG AGTCTTCCGC TACCGAACTG
CAAACTGTTA TTGACACCTG CCAGACCGGA ATTTTTCTGT TCACGCCCGT TCGAGACCTG
GCTGGTGAGG TACACGACTT TCGGTTCAGA CTTGCCAATC AGCAGCTGGC ATCTTATGTG
GGTGAAGAAT CGGAAGCCCT AATCGGAGCC TTGGGGAGCA CATACTTTCC TGATTACAAG
ACGAACGGGT TATTTGAGCG GTATTACAAA ACATACAGCA CCGGCCTGTC GCAGCGGTTC
GACTTCCATT ATTTTGGCAG TGGCATTGAT GTCTGGCTGG ACATTATGAC CACCAAAATG
AATGATGATG TGCTGGTGAC TTTTGGCGAC TATACACCTC TCAAGCGGCT TCAGCAGGAG
CTGGAGAACT CGGTAGTTGA ATTACAGCGT TCGAACAAAA ATCTGGAGCA GTTTGCCTAC
GTAGCGAGTC ATGACCTACA GGAACCACTG CGTAAAATTC AGGCGTTTGG CGATCTTATC
CAGTCGCAGT TTGCGCCGGT AATCGGTATC GAAGGCGCCG ATATGATCAA CCGGATGCAG
TCGGCGGCTG CCCGAATGCA GATTCTGATC AAAGATGTTC TGGCTTATTC CCGCATTGTA
ACGAAGCAGG AAACCGTTGG CCCGGTTAAT TTGAATCAGG TGGTAGCTGA TGTACTCATT
GATCTGGAAA CGGCCATTGC TGAGAAAAAA GCGGTGATCA CCGTGGATGC TCTGCCAACT
ATCCGGGGTG ATGCGGCCCA GCTACGTCAG CTTTTTCAAA ATCTGGTTAG TAACGCCCTC
AAATTTACCC GGCTGAACGA TGCGGATGAA CTGCCGACAA TCCATATCAA CGCCCGTCAG
CTCTACGGGC GCGAACTGAC CGAACCCTCG CTGCTTCCCG CGGATGGCAA TCGATTGTTT
CACCTTATCC AGGTAACCGA TAATGGAATC GGGTTCGACC CGCACCAGGC CGATCGGATC
TTTCAAGTAT TTCAGCGCCT TCATGGCCGC AGTGAATACC AGGGAACAGG CATTGGGCTT
GCCATTGTAC AGAAAGTAAT CGATAATCAC CAGGGGCATA TCTTTGCTGA AGGACGACCG
GGCCAGGGAG CTACGTTCCG GATTCTTTTG CCTGTTTAA
 
Protein sequence
MLADLPTKLS LAQVFDTLPD SVFWMRAVRA TEKNTDSLVR GTVDPAAGQL VDFVVEYVNP 
RVSELFTGEA QVEVGLSVRS GGYWHSDFTE DVFQQLCHIM ETGQSMEMEY FNPVLRQWLC
VTRSKAGDGV LGIVRTITTP KEVVLETERQ RLLLDSILNT SLSTVFVYEA IRDQNNEIQD
FSLRMVNKQG QIEAQIHAGF DVVGKTLLTI NPNSRQSGQF NLFKQVIESG KPIEVEQYYA
FADVWYNTSI TKLNDGVVVM GYNITHQKIA ALETERQRTL LNEIINISQD TILVLESIRD
STGAISDFRF THANPAVKSL LGQSIETLLQ RTFLSFYPGA QEEGLFRIYQ QVVETGEAYQ
GEHFYNRDGL NNWFDISAVK HGDGLVLTVT NLTKARLAEQ AIVQSAANLQ AVIDVAQTGI
LVISPVLNPA GELIDFRFKT INRVMAALIG QTPDKLTGAI MSDWFTQYRE MGLFERYRYT
FETGEKKRFE LNYAVDHQNI WFDVKVIRFE GDLLVTFTDY TTLKQTQQTL EQTAIKAGRQ
AELLNSVLDS SNSGVIAFEA IRDETHTIVD FRFLVANQSS TGMLSRSQEE MIGNTLLTIF
PGNVESGLFD LYRRTTETGE PGYTEVYYNH DGLDFWLDIS AQKLGDGFVV TFTDVTAAKR
SGILIEKSAA ELRTVIDSAQ VAIFLIHPVF NDVGRIVDFR FRTANQMVAG YVGQEPDALM
EELVSRWFPE YMTNGLFMRY VAIFETGRTQ HFNFHYETET NDFWESYTVL KLGQDVLVTF
SDYTELKKLQ QRLESSATEL QTVIDTCQTG IFLFTPVRDL AGEVHDFRFR LANQQLASYV
GEESEALIGA LGSTYFPDYK TNGLFERYYK TYSTGLSQRF DFHYFGSGID VWLDIMTTKM
NDDVLVTFGD YTPLKRLQQE LENSVVELQR SNKNLEQFAY VASHDLQEPL RKIQAFGDLI
QSQFAPVIGI EGADMINRMQ SAAARMQILI KDVLAYSRIV TKQETVGPVN LNQVVADVLI
DLETAIAEKK AVITVDALPT IRGDAAQLRQ LFQNLVSNAL KFTRLNDADE LPTIHINARQ
LYGRELTEPS LLPADGNRLF HLIQVTDNGI GFDPHQADRI FQVFQRLHGR SEYQGTGIGL
AIVQKVIDNH QGHIFAEGRP GQGATFRILL PV