Gene Slin_1031 details

Gene Information

• Locus tag: Slin_1031
• ID: 8724761
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: -
• Start bp: 1251784
• End bp: 1255179
• Gene Length: 3396 bp
• Protein Length: 1131 aa
• Translation table: 11
• GC content: 51%
• Product: GAF sensor hybrid histidine kinase
• Protein accession: YP_003385881
• Protein GI: 284035951

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.768055
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATAAAAT CATTATCTAG CCGTATATAC TTTGGAGCAG CCATCACCTT TCTGATGGTA 
CCAATTATCA TTCTGCTTTA TTTCAGCGCC TTCCGCAGGC ATGACGCCTT ACTGGTAAAA 
TCGACTGAAT CCGAGAAGAT TACCGAACTG GTTTTTAGAC TTCAGCTGGC ACTGGCCGAC 
ATGAATGGCC TGGTTAAGAG TACTACCTCC TCTTCTCTCA AACCCCAGAC AAATCCGCTC 
GCTATAGCGA CTATCGACCG GCTGCTGAGC GACCTTGACA ACCTGCTCAA AGCCGATCCG 
CGCCAATTGA ATCGAATGCA TAGGATTGAA GGTGCAACGA CCGCTTACCT GGCCGGTGAC 
CTAACTAAAC TGGACAACCT TCGCCTGGAA TTGACCCAAC TCAGGCAGGA AATCCAGCAA 
GACTTGCTAT TGCGGCAGCA AAAAGAAATG GATACCGACT ATCTTGAAGA GTGTGCCATG 
TGGGTAGCTG TTCTGGTAGC GGTAATCAAC ATCACCATTT TGATACTGGT CATTTTTGAC 
GAGTTTAGGA AGCGTCGGCG AGCTGAGCGT GAACTGAAAA CGAATCTGGC TACCATGCAA 
GCCTTCAATC TGGAAAGTGA AGAACAGAAC TGGCTGCTTT CCGGCATTTC GGCGGTGAGT 
CATGGGTTAC AGGATCAGGG CACTCCGCAG GATATGGCCA AGCGGATCAT TGATACGCTT 
GCCGATTATC TGGACTTACC GGCGGCTGCC ATATACCTCT TCAATTCGGA TGAAAAATAC 
CTTGAACGGG TTGCAACTGT TGGGTTGCCG GGCGAGGTAT CGGCCCGATT TCTATTGGGA 
GAAGGGCTGG TTGGGCAAGC TGCCCAGGGG CAGAAAATTG TTACGATCAA TGAAGTACCC 
ACCGAATACT GGAAGATTCA GTCGGCAAGC GGACAGGCAC AACCGGGACA GTTGGTACTG 
GTGCCGTTAT GGTACCGGAA AGATAAAGAG TTGATCGGCG TTCTGGAACT GGCGTCGTTC 
CGCATCCTGG AGCCACCCGT CATGAAGCTG CTCAAACGCC TGATGGAAAC GCTGGCTGTG 
GCTATCAACT CCTCGCAAAC GCACGAACAG GTACGTGCTT TGCTGGAACG GGTGCAACAG 
CAAAACGAAC TGGTTGCCGA ACAGCAGGAA GAACTCCGTC AAACGAATGA CTCCCTGCTG 
CGTCAGGCCG AGAATCTACA GGCATCAGAA GAAGAGCTGC GGGTTCAGCA GGAGGAGCTG 
CGGCAAATCA ACGCAGAACT GGTCGAGCGG AATGAGGCCG TAGAAATTGC CCGGCAGTCG 
CTGGCGCTCA AAGCCCGTGA GCTGGAAGTG ACCAGCCAGT ATAAATCGGC CTTTCTGGCC 
AATATGTCGC ACGAGTTACG GACACCCCTC AACAGCGTCC TGATTCTGGC CAAACTGCTG 
GCCGACAATA AACCTGACAA CCTCACCGCC AAACAAATTG AGTACGCAAC CATCATCCAC 
AGATCGGGCA ATGACTTATT GACTCTCATC AACGACATTC TGGATCTGGC CAAAATTGAA 
GCGGGGCATA TCACTGTTTT ACGGGAATCC GTACCCGTTA AAAGTATCGT TCGGGACCTT 
ACTCAGTTGT TTACTGTTGT TGCCGAAGAA AAAAAAGTGC AACTGATTAC TAAACTTCAT 
GAGTCTGTAC CTGCAGAAAT TCTGACCGAC CGGCTTCGGA TAGAACAAAT CCTTAAGAAT 
CTGCTGTCCA ATGCATTTAA GTTCACCCCG CGCGACGGCC GGATCACGCT CTCGCTTTCT 
GTCGAAACGA GTTTTCCCAA AATTACCCGC CAGGAATTAC GAAAGGAGAA GTCACTATTG 
GCAATCGCCG TTTCCGATAC GGGTATTGGT ATTCCGGCCG ATAAACAGCA ACTGATTTTT 
GAAGCCTTTC AGCAGGTAGA TGGCTCAACA AGCCGCAAAT ATGGTGGCAC CGGCCTCGGG 
CTTTCCATCA GCCGGGAACT GATCAAACGG CTGGGGGGCG AAATCACCCT TCACAGCGAA 
GAGGGTAAAG GAAGTACCTT CACCTTATGG CTGCCGCTGT CGCTTTCGGT GACCCCACAG 
CCAGGCACCA CCCCACCCGA AACAGTAAAG CCGGATCGAA TTAGTGCCCC GGTTCCGCAG 
TCGCTTCCTG TTCAGCCGAT AACCGTTGCC GACGACCGTG AGACGATCCG GAAGGGCGAC 
AAGCTGATGC TCATTATTGA GGACGATGCC CGCTTTGCCA GTGTTGTTCA GGACTTTGCC 
CGTACTAAAG GCTATAAAAC GCTGGTGGCG CTTCAGGGCG ACGAGGGTTT GGCTTACGCC 
CGACGGTATG AACCAACGGC CATTATTCTG GACCTGCACC TACCGGCCCT GGATGGAATC 
AGTGTTCTGA AACTGCTCAA GGACGACAAA AAACTAAGTT CCATACCGGT GCATGTTATG 
TCGGCAAGCG ATGAGCAGCA GTTGGTTCTG CCCGGTGCGC TTGCTTATTT ACAGAAACCG 
CTCACCAAAC AGGACCTGGA AGATGCCTTC ACCCGAATTG GTGACTGCAT CAGCGAACAG 
GTCAAAAACA TCCTGGTCTT GTCGGGCGAT TATTTACCCA ATAACTCACT GACCAAACTG 
ATTGATGAAA GGCACTTCGA TATCAACTGC GACTATGCCG TACTCGATGA CGAGGCCCTG 
CAGAAAGTCC ATGCCAAAGC ATACGACTGC ATCATTGCAG ACATTGGTAA AGATTTGGAC 
TTGGGTACTC AGAAATTACG GGAGTTACAG GCCGCCATGG CGGATGACCA GACACCAGTA 
ATTATTTATC TGGATAAAGA ATTATCCTCC TCCGACGAAT TACAGCTGAA AAAACTTTCC 
GATACGGTTG TTCACGACTC CGCCCAGGCG AAAGAACGGC TCATGGATCA GCTCGAATTA 
TTCCTCTATA ACGTTCAGCA GAAATCCCAC CATGTAGAGT CACAAACGCC CGTCAAACCC 
CTTCTCCCAG GCAGCACCAA TTGGCAGGGC AAGACCGTCC TGCTGGTTGA CGACGATATG 
CGGAATGTCT TTTCGATCAG TACGCTGCTG GAAGAAAACA AGTTGACGGT CATTACCGCC 
AGTGATGGGC AGGAAGCTAT TGATACCCTG ATCAGCCAAT CGCAGATCGA CCTGGTCCTG 
ATGGATATTA TGATGCCGGT CATGGATGGT TACGAGGCTA CCCGAAAAAT CAGAGCCGAG 
AACCGGTTTG CGAAACTGCC AATTATAGCC CTGACGGCTA AAGCCATGCC CGGCGACCGG 
GAAAAATGCC TTGAAGCAGG AGCGTCGGAT TACATCACCA AGCCACTGGA TGTAAACCAG 
CTGCTGTCTG TCATGCATAC CTGGATGCCT TCCTGA 

 

Protein sequence

MIKSLSSRIY FGAAITFLMV PIIILLYFSA FRRHDALLVK STESEKITEL VFRLQLALAD 
MNGLVKSTTS SSLKPQTNPL AIATIDRLLS DLDNLLKADP RQLNRMHRIE GATTAYLAGD 
LTKLDNLRLE LTQLRQEIQQ DLLLRQQKEM DTDYLEECAM WVAVLVAVIN ITILILVIFD 
EFRKRRRAER ELKTNLATMQ AFNLESEEQN WLLSGISAVS HGLQDQGTPQ DMAKRIIDTL 
ADYLDLPAAA IYLFNSDEKY LERVATVGLP GEVSARFLLG EGLVGQAAQG QKIVTINEVP 
TEYWKIQSAS GQAQPGQLVL VPLWYRKDKE LIGVLELASF RILEPPVMKL LKRLMETLAV 
AINSSQTHEQ VRALLERVQQ QNELVAEQQE ELRQTNDSLL RQAENLQASE EELRVQQEEL 
RQINAELVER NEAVEIARQS LALKARELEV TSQYKSAFLA NMSHELRTPL NSVLILAKLL 
ADNKPDNLTA KQIEYATIIH RSGNDLLTLI NDILDLAKIE AGHITVLRES VPVKSIVRDL 
TQLFTVVAEE KKVQLITKLH ESVPAEILTD RLRIEQILKN LLSNAFKFTP RDGRITLSLS 
VETSFPKITR QELRKEKSLL AIAVSDTGIG IPADKQQLIF EAFQQVDGST SRKYGGTGLG 
LSISRELIKR LGGEITLHSE EGKGSTFTLW LPLSLSVTPQ PGTTPPETVK PDRISAPVPQ 
SLPVQPITVA DDRETIRKGD KLMLIIEDDA RFASVVQDFA RTKGYKTLVA LQGDEGLAYA 
RRYEPTAIIL DLHLPALDGI SVLKLLKDDK KLSSIPVHVM SASDEQQLVL PGALAYLQKP 
LTKQDLEDAF TRIGDCISEQ VKNILVLSGD YLPNNSLTKL IDERHFDINC DYAVLDDEAL 
QKVHAKAYDC IIADIGKDLD LGTQKLRELQ AAMADDQTPV IIYLDKELSS SDELQLKKLS 
DTVVHDSAQA KERLMDQLEL FLYNVQQKSH HVESQTPVKP LLPGSTNWQG KTVLLVDDDM 
RNVFSISTLL EENKLTVITA SDGQEAIDTL ISQSQIDLVL MDIMMPVMDG YEATRKIRAE 
NRFAKLPIIA LTAKAMPGDR EKCLEAGASD YITKPLDVNQ LLSVMHTWMP S