| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0963 |
|---|
| Symbol | |
|---|
| ID | 8724693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 1173545 |
|---|
| End bp | 1175089 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003385813 |
|---|
| Protein GI | 284035883 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000181436 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.00536177 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTATA AACTCATTTC GAACCATATG ACACGTAAAT ACATTGCGAC CTGGCTTTTA
GCAATTGCCT TAACCGGTTG CAGCAAAGAT TTCCTGACTG TAGTTCCCGA AACAGAGCTG
AGTTCGGCAA CATTTTTCAA GACTGAAGCC GATTTTCAGC AGGCTGTCAA TGGAGCTTAT
GTACCCCTTC GGCAAATGTT TAACGAGCGG GCCTGGGTGT TGGAGGAGAT GCACTCCGAC
AATACGTATT ATGCCCGTAA CACGCTCTAC GGGGCTGTTG ACCCAACTGA AAACGTAGCT
GATTTTGCCG TTCCAACGGC CAACGGAGTT ACCGCCAATG ACAACGTATT GGTACAGTAC
CGGCTGAATT ATGTGATAAT TGCCCGGGCC AATCAAATTC TGTCGCTTAT CGACGGCAAT
GGCGTAACGT TCAGTTCAGA AGCATTGAAA AATAATCTGA AAGGACAGGC CTTGTTTCTG
AGAGCCTTCG CCTATTTTGA CTTGGTGCGC CTGTTTGGCA AAGTCCCGTT GCATTTGGTG
CCGGTTACCG GTCGTGAAGA CGCAGCTCTG CCTTTGGCTA CAACAGATGC TCTTTATGCG
CAGATCGAAA AAGATGCCTT AGCGGCCAGT ACTGCCTTGC CGAACAAAGC TACTCAGCAA
GATGGACGGG CTACATCGGG AGCGGCTAAA GTCCTGCTGG CGAATCTGTA CATTACACAG
AAAAAATGGG CGCAGGCTGA AACACTGCTG AAAGCGGTAG TCGCTAATGA TGGCTATATA
TTGATGCCCG ATTATAACGA TGCGTTTTCG TTTACCAGCG CGAACAAGAA CAACAAGGAG
TCTGTGTTCG AGATTCAGTA CATGGAAGGT TCGGCTGGGT ATAACGGTAA CCAGATTTAC
CGCTTTATTC CATCTCCCAT AACGGCTACG GAGATTGCCC CTCTTACCGG CACATCGAAC
CCGCAGCCTA CGTCGCAGGA GAGTAACAAC ATTCCGACGC CGGATCTTAT TGCCGCTTAT
GAACCCGGCG ATAAGCGGAA GGATATTTCT ATCGGGTACG TTACGTTGAG TGGTAGCCTA
CGCGCCGATA AAACGTATCC GTATATCAAA AAATACGCTC GCCCTCACTC GCAGCACAAC
AATACCGGTC AGAACTGGCC TGTCTATCGC TACGCCGAAG TGCTGCTATT CCTGGCAGAA
TCGCTAAATG AGCAGGGCAA AACGGGTGAG GCTGCTCCCT ATATCAATCA GGTACGTGCT
CGTGCAGGTC TAGCCGCTAC AACGGCATCG TCGCAGACCG ATATGCGGGA GGCTATTTTC
AGAGAACGGC GCGTTGAGCT GGCTTTCGAG AATAAGCGTT GGTTTGACCT GACCAGAACG
GGTCGTGTAA AGGAGATTAT TGGTGCCTAC GGCGCGAAGG TAAAAGCCAA CCCGGCTGCG
TATTACTTCC CAGCTGGAGC GGTTCCGCCA CCGAATGCCT TCACCGTTTT GGACGATTAT
TACGGACTGC CAGCGGTTGA AGCGGCTTTG ACTCCGAATT TCTAA
|
|---|
| Protein sequence | MAYKLISNHM TRKYIATWLL AIALTGCSKD FLTVVPETEL SSATFFKTEA DFQQAVNGAY
VPLRQMFNER AWVLEEMHSD NTYYARNTLY GAVDPTENVA DFAVPTANGV TANDNVLVQY
RLNYVIIARA NQILSLIDGN GVTFSSEALK NNLKGQALFL RAFAYFDLVR LFGKVPLHLV
PVTGREDAAL PLATTDALYA QIEKDALAAS TALPNKATQQ DGRATSGAAK VLLANLYITQ
KKWAQAETLL KAVVANDGYI LMPDYNDAFS FTSANKNNKE SVFEIQYMEG SAGYNGNQIY
RFIPSPITAT EIAPLTGTSN PQPTSQESNN IPTPDLIAAY EPGDKRKDIS IGYVTLSGSL
RADKTYPYIK KYARPHSQHN NTGQNWPVYR YAEVLLFLAE SLNEQGKTGE AAPYINQVRA
RAGLAATTAS SQTDMREAIF RERRVELAFE NKRWFDLTRT GRVKEIIGAY GAKVKANPAA
YYFPAGAVPP PNAFTVLDDY YGLPAVEAAL TPNF
|
|---|
| |