Gene Slin_0943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0943 
Symbol 
ID8724673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp1134918 
End bp1137326 
Gene Length2409 bp 
Protein Length802 aa 
Translation table11 
GC content47% 
IMG OID 
Productprotein of unknown function DUF214 
Protein accessionYP_003385793 
Protein GI284035863 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.747295 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCCAGA ACTACCTTAA AATTGCGATC AGGAATCTGC TTCGGCACAA GTTCTATGCC 
CTGCTCAACA TCATTGGTCT AGCCGTTGGT ATGACGTTTA CCGGGCTCAT TGGCAGTTAC
GTCTGGAGCG AATTACAGGT TAATAACGGA CTACGCAATG CCCCTTATCA ATACATCATC
CGCAGTAAAT GGAAACAGCC CGGCTTAGGC TACGAAGATG TAACGGTGGC CCCGCTGGGT
AAAACGCTGA AAGAAAAATA CCCTGGCTTA GTCGCTAATT ATTACCGGTT CGACGTACTC
ACGACCGCCA TATCCAGCGG CAATAAACAC TTTGTTCGGG AGGTAGCCCA AGCGGGTGAC
TCAACCATGA TATCCATGTT TGGGTTTACC ATGCTGTATG GGAATGCCCG AACAGCCCTC
AAGGCGCCAA ATTCAGTGGT GATTACGGAA GAAAACGCCA TCAAGTATTT TGGTAAAACG
GATGTACTTG GGCAAGTGCT GAATCTGAGC AATTATACAG GCAGTAAGCA GGAATTTGTA
GTGACCGGAG TATTGAAAAG TCTGCCTAAA AACTCGGTTA CCTACCTGTG GGATTTGCCG
GTAAATGTCT TCATCCCCTT CAATAGTTTG CAGGGTCGCA CGGATGCAGA TGGCTGGATG
ACCTGGAATA TAGCCAACTA CATCGAGTTA AAAGAAGGCA TAAGTCAGGA AGATATACAG
CAGCCAATGG AGCAAATTCT GACCACCTAC GCCCCAAAAA CCGCTCGTAA AAATCTTCAG
CCCTACCTTA CGCCACTAAA AGATTACTAT CGCGATTTTA ACAAGGGCAT TGTCCGGAAA
ACGATCTATA CGCTGTCGGG AATAGCTCTG TTTATCCTAT TAATGGCTAT CGTCAATTTC
GTCAATAGCG CAGTGGCTAA CTCAAGCTCA CGCATCAAAG AGATTGGCAT ACGAAAATCA
TTGGGGGGTC AAAAGCAGCA ATTGATCGTC CAGTTTTTGG CCGAGTCGAC CATAATAGCG
ATGCTGTCGA TGATCATATC ACTGCTTTTT TACGAGTTAT TCCGATCTTC ATTCAGCGAT
ATAGTCGGCA GAAGAATCGA CTCGCTATGG ACTGTATCGC CTTATTTTCT ACCTGTACTT
GGCTTGTCGA CTCTCCTGAT TGGACTATTA GCCGGACTCT ATCCGGCACT TATCCTATCC
TCTTTACCGT CGGTCGATTC CTTGAAAGGT AAATGGAAAT CAGTAAAAGA GGGGATCGTC
TTCAGGCGGT TACTAATAAC GGCTCAGTTT TCCATTGCGC TGCTTGTGTG TTGCGGAGCC
GTAATTGTCT CCCAACAGGT CACCTATTTA TTTGACAAAG ACTTAGGCTA CAATAAAGAG
TCGATTGTAC TACTATCCAT ACCCCGTGAC TGGACACCGC AGGGCGTAGC TAGCATAGAA
GCCGTTCGGA ACGAATTGGC CCGATTGCCC GTCGTAAAAG ACATAAGTAT TTCCTCTTCG
AGCCTCAAAG GTGGTCCGGC CTACGACCTG CACATGTATG CGGTTGAAGA AGATTCTACC
GAAGCCATGT CGACATCCAT CCTCCAAACC GACGAAAATT TTGTTCGAAC ATACCAGATA
CCACTACTTG CCGGTCGGTT TTATACGTCT TCGGCGCGGG CAGAGCAGGA AAACAAACTC
GTTCTAAATG AATCAGCCGT GAAGGCATTG GGCTACCACA ACCCGGAAGT GGCTGTTGGA
CGACAGGTCT ATATTCAGGG TTATCGAAGT CCCATAACCA TTATTGGCGT AACGAAGGAT
TTTAGTTTTC GCTCAATGAA GGAAAAGATT ATGCCCACTG CCATCGGCCA TATCAATGGA
GCCGGTTATC TGTTTGCTTA CTTTTCGGTT AAACTTAGCT CCGGCGATTT ACCCAGCTCT
TTGGTCAGTA TCGAGAAGCG ATTCCACGAG CTGCTCCCTG ACGCGCCTTT CGAGTATTCG
TTTACGGACG AAGCATTGCA GCAATTGTAT CAAGCCGAAA TTCAACTAAA AAAAGCTTCA
CAGACGGCTA CCCTTCTAGC TATGCTCATC GTTGTGTTGG GTATTCTGGC GATGGTTTCC
CTGAGCTTGG CTCGGCGAAT GAAGGAAATG AGTATTCGTA AAGTACTGGG CGCGAGTGTG
CCAGGGATTG TCCTGTTGTT TATGAAGGAG TTCCTACGGG CATGGCTTAT CGCAATGCTG
GTTGCATGCC CCATAGCCTA TCTGCTTATG GAGCATTGGT TGCAGACTTT CGCCTATCAC
ATCGACGTCA GCCTGTTCTC ATTTGGTTTC ATTAGTCTGT TCTTTCTATT ACTCATCGGC
CTGATCGTCA GTTCCCAAAG CATCAAAGCG GCTCTGATGA ACCCGGTGAA GAGTTTGCGT
AGTGAATAG
 
Protein sequence
MFQNYLKIAI RNLLRHKFYA LLNIIGLAVG MTFTGLIGSY VWSELQVNNG LRNAPYQYII 
RSKWKQPGLG YEDVTVAPLG KTLKEKYPGL VANYYRFDVL TTAISSGNKH FVREVAQAGD
STMISMFGFT MLYGNARTAL KAPNSVVITE ENAIKYFGKT DVLGQVLNLS NYTGSKQEFV
VTGVLKSLPK NSVTYLWDLP VNVFIPFNSL QGRTDADGWM TWNIANYIEL KEGISQEDIQ
QPMEQILTTY APKTARKNLQ PYLTPLKDYY RDFNKGIVRK TIYTLSGIAL FILLMAIVNF
VNSAVANSSS RIKEIGIRKS LGGQKQQLIV QFLAESTIIA MLSMIISLLF YELFRSSFSD
IVGRRIDSLW TVSPYFLPVL GLSTLLIGLL AGLYPALILS SLPSVDSLKG KWKSVKEGIV
FRRLLITAQF SIALLVCCGA VIVSQQVTYL FDKDLGYNKE SIVLLSIPRD WTPQGVASIE
AVRNELARLP VVKDISISSS SLKGGPAYDL HMYAVEEDST EAMSTSILQT DENFVRTYQI
PLLAGRFYTS SARAEQENKL VLNESAVKAL GYHNPEVAVG RQVYIQGYRS PITIIGVTKD
FSFRSMKEKI MPTAIGHING AGYLFAYFSV KLSSGDLPSS LVSIEKRFHE LLPDAPFEYS
FTDEALQQLY QAEIQLKKAS QTATLLAMLI VVLGILAMVS LSLARRMKEM SIRKVLGASV
PGIVLLFMKE FLRAWLIAML VACPIAYLLM EHWLQTFAYH IDVSLFSFGF ISLFFLLLIG
LIVSSQSIKA ALMNPVKSLR SE