Gene Slin_0868 details

Gene Information

• Locus tag: Slin_0868
• ID: 8724598
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 1043470
• End bp: 1046823
• Gene Length: 3354 bp
• Protein Length: 1117 aa
• Translation table: 11
• GC content: 52%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003385722
• Protein GI: 284035792

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.503541
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 43
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCAATAT CTATAAACTA CCTAGTCACT CGAAGGCTTG TGCATAAATT GCTGCCGTTG 
TTGCTAATCG CGATATCGAT CAATACAGTT CTGGCTTCAA CTACTCAGGA GTTACTGGAT 
CAACGGATTA GCGTTCAGCT GGATAATAGC ACCATTCGAC AGGCACTGCT GAAGCTGGAA 
AAGACGGCCC ACGTCAAGTT CGTGTACAGT CGACAAATTA TTCATCTTGA CCGTAAAGTT 
TCACTCGTGG CAACGGAGGA GAAACTGGCG GTTGTCCTGG AACGACTGCT GAAGCCGCTG 
CGGTTACAAT ACATGGTTTC AGGCAGCCAG ATTGCCATTG TTCCGGGCGC TTCCGCTCCA 
GACTCTATCC TGTCAGAATC CGAGAATACA GGTAACGCAG GTTCGTTCAA ACGAGCGGGT 
GAAACAGCCG ATCGCGTCAT TACAGGAACC GTGCAAAGTG AGACGGGTGC GGGCTTGCCG 
GGAGTGAGTG TTGTTGTCAA AAATACCACA AGGGGAAGCA CAACAAATGC TGAAGGAAAC 
TATAGACTGA CCATTCCGGA CGAAGCAACT ACGCTGGTTT TTTCGTTTGT AGGCTATCAA 
AACCAGGAAG TCGCCATCGG AAACCGAACA ACGGTTGATG TACAGCTAGT ACCCGATAAT 
AAGGCACTGG ACGAAATCGT GGTGGTGGGC TATGGCACGG TCAGGAAAAG CGATCTGACA 
GGATCAGTGG CCTCGGTGAA AAGCGAACAA CTCACCGCTT ATCCTGCCAC AGGAGCCGTG 
CAGGCGTTGC AGGGCCGGGC GGCAGGAGTT CAGATTCAGG CAAACAATGG GGAACCGGGC 
ACCAGTTTCA AGGTGCGTAT CCGGGGGGGT AATTCGATCA ACGCGAGTAG CGATCCGATT 
TTTGTGGTCG ATGGCTTCGT TGGTGGAACA TTACCCCCAC CGGAAGACAT TGAATCGATC 
GAAGTATTGA AAGATGCTTC AGCCACCGCC ATATATGGGT CGCGGGGTGC CAACGGGGTT 
GTGATGGTCA CTACCAAACG GGGTAAGAGC GGTAAGGCGC GCATTGATTT CAATGTCTCG 
CATTCCTTTC AGAAGGAAAT TAAACGGCTC AACTTACTCA ATGCCGACCA GTTTGTAAGC 
TACCTAAAAG AAATCAATCC GAATTACGTA TCACGGGGGC AGAATACCGA CTGGCAGGAC 
CAGATTCTCA GGCCCGGGGG TATTCAGAAT TACCAGCTTT CACTATCTGG AGGTAACGAC 
AACGTAAAAT ACTACATTTC CGGGGCGTAT TTTGATCAGA AAGGTATCGT TATTAATTCT 
GATTTCAACC GGTTTTCGAT CACCAGTAAT ATCGATGTCA AAGTCTCCGA TAAGCTGCGG 
GTAGGTCTGA ATGTGTTCGG ACAACGCAGC AACAAAGCTG GCGTAATCAG TCAGGAGCTA 
TCGGGCGGGC CAGCGGGTAC CGGCGTGATC GCATCAGCTT ATAAATTTGG TCCCGACCTG 
GGAATTTACG ATGCCAACGG TCGGTTTTCC ATTGCTGCCA TTTCCGACCC GATCGACAAT 
CCCTACGCTA TCGCTACCCA GCGCCAGAAC AATACCGTTA CGGATCAGAC ACAGGGAAAT 
TTGTTTGCTG AATACCAACT TCGCAGCGAC CTGAAATTCA GAGCTACCTT GGGCACGACA 
ACCAACACCG GTCGGACAGG GATGTACACG CCCACCACAC TGAATGCCGG AGCGTCCGTT 
GGGGGCGAAG CCTCGATGAC AGGTTTTCGC AATACGTTGT TTCAGAGTGA GAACTACTTG 
TCCTACGACA AATCGTTTGG TGAAGCCCAC CGCGTGGGTG TGGTGGGCGG GTTTTCCTAC 
CAGACTTCCC GCAATGAGAG CTGGGGCGGT AGCGGTCAGT CGTTTATCAG CGATGCCCTC 
TCGTACTGGA ACCTGGGGAG TTCGTCGGTC TGGCAAGCTC CTTCCTCGGG GTTGACCGAC 
TGGAAACTGG CCTCCTGGTA TGGCCGGATC AATTACGCCC TGAACGATCG GTATCTGGTT 
ACGGTCAACG CGCGTTATGA TGGTTCGTCA ACCTTTAGCC GCAACCACAA GTGGGCCTTT 
TTCCCATCAG GTGCCTTCGC CTGGAACATG GGCAACGAAT CGTTCATGGC GGGTTTGCCG 
TGGGTAAGTC AGTGGAAGTG GCGGGCCAGT TACGGCATCA CGGGTAATCA GGCCATTTCA 
CCCTACCAGA CGCTAGCTCG CTTTTCGACG GTATATGCGG CCACCAACGG GGTAGGCGTC 
AACGCTATCA CACCATCGTC CATTGCCAAT GACGACCTGA CCTGGGAAAC CGCGGCTCAA 
TTCGATCTGG GCACCGACAT TAGTTTGTTT AACAACCGGC TGAACCTGAC ACTCGACTAC 
TACCGTACCA TTACGTCAAA TTTACTCTTC AGCGTCCCCC TGCCGCAGTA TTCGGGCTAC 
ACGAGCCAGT TGAAAAACAT CGGTAAGCTA CAGAATCAGG GATTTGAAGT TACGCTGGGA 
ACCCGGAATC TGACAGGCCC GCTCCGTTGG GACATGGACG TTAATTTTTC CCTGAACCGC 
AATAAGGTAC TGAGTTTACC CGGAGGAAAA GACATTTTCT ATTCGTCGGC ACCGGGGCAT 
CTGATTGGAC TGGATCAAAC GCAGATTCTG CGTGAAGGTG CCCCGGTGGG TAGCATGTTC 
GGCTGGATAT ACGATGGCGT TTACCAGACC GGCGACGCTT TTCTGACCGG CTCAGGCTTT 
GAGCAGACAG CTGGGGGTGA AAAATTTCGG GACCTTGATG GCAACGGAGC TATCAATAGT 
AACGACCGGA CCATTATTGG CAATCCCAAT CCGAAATTTA TCTGGGGCTG GACCAACGAG 
TTCAAATGGC GGAACATGGA CCTGAATTTG TTCTTTCAGG GATCGCAGGG AAACGACATG 
CTGAGCTACA CGCTCATGGA ACTGGACCTA TTGTCGGGAA TCAATAACGC TACCACCAAC 
GCCCTGAATC GCTGGACACC CCAGAACACC AACACCAACG TGCCGAAAGC ATCAGGGGCG 
CGTACCCGCC GGGTATCGAC CCGCTGGATT TACAACGCAA GTTATGCACG GCTAAAAAAC 
CTGGCGGTGG GCTACACCTT CCCCAAGTCG TTCACCAGCC GAGCTAAAAT TAGTCGCTTA 
CGCATCTACG CGAGTGCGCA GAACATCCTA ACAATAACCG ACTATCCAGG GTACGACCCG 
GAGGTTAACT ACAACTCGGC CGGTTCGGCG AACGGCAACC AAAATCTGGG ACTTGATTAT 
GGTAGCTACC CAAATGCTAA ATCATACACC GTAGGACTAA ACATTGGCTT TTAA 

 

Protein sequence

MSISINYLVT RRLVHKLLPL LLIAISINTV LASTTQELLD QRISVQLDNS TIRQALLKLE 
KTAHVKFVYS RQIIHLDRKV SLVATEEKLA VVLERLLKPL RLQYMVSGSQ IAIVPGASAP 
DSILSESENT GNAGSFKRAG ETADRVITGT VQSETGAGLP GVSVVVKNTT RGSTTNAEGN 
YRLTIPDEAT TLVFSFVGYQ NQEVAIGNRT TVDVQLVPDN KALDEIVVVG YGTVRKSDLT 
GSVASVKSEQ LTAYPATGAV QALQGRAAGV QIQANNGEPG TSFKVRIRGG NSINASSDPI 
FVVDGFVGGT LPPPEDIESI EVLKDASATA IYGSRGANGV VMVTTKRGKS GKARIDFNVS 
HSFQKEIKRL NLLNADQFVS YLKEINPNYV SRGQNTDWQD QILRPGGIQN YQLSLSGGND 
NVKYYISGAY FDQKGIVINS DFNRFSITSN IDVKVSDKLR VGLNVFGQRS NKAGVISQEL 
SGGPAGTGVI ASAYKFGPDL GIYDANGRFS IAAISDPIDN PYAIATQRQN NTVTDQTQGN 
LFAEYQLRSD LKFRATLGTT TNTGRTGMYT PTTLNAGASV GGEASMTGFR NTLFQSENYL 
SYDKSFGEAH RVGVVGGFSY QTSRNESWGG SGQSFISDAL SYWNLGSSSV WQAPSSGLTD 
WKLASWYGRI NYALNDRYLV TVNARYDGSS TFSRNHKWAF FPSGAFAWNM GNESFMAGLP 
WVSQWKWRAS YGITGNQAIS PYQTLARFST VYAATNGVGV NAITPSSIAN DDLTWETAAQ 
FDLGTDISLF NNRLNLTLDY YRTITSNLLF SVPLPQYSGY TSQLKNIGKL QNQGFEVTLG 
TRNLTGPLRW DMDVNFSLNR NKVLSLPGGK DIFYSSAPGH LIGLDQTQIL REGAPVGSMF 
GWIYDGVYQT GDAFLTGSGF EQTAGGEKFR DLDGNGAINS NDRTIIGNPN PKFIWGWTNE 
FKWRNMDLNL FFQGSQGNDM LSYTLMELDL LSGINNATTN ALNRWTPQNT NTNVPKASGA 
RTRRVSTRWI YNASYARLKN LAVGYTFPKS FTSRAKISRL RIYASAQNIL TITDYPGYDP 
EVNYNSAGSA NGNQNLGLDY GSYPNAKSYT VGLNIGF