Gene Slin_0795 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0795 
Symbol 
ID8724525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp962069 
End bp964804 
Gene Length2736 bp 
Protein Length911 aa 
Translation table11 
GC content47% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003385657 
Protein GI284035727 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.403179 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.168088 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACCC CAACGAGCGT ATCTTCCTCT GCTACCCCTT TGAACCTTTT CGCCAGCTTA 
GTAGACCATT CACCAAATGG AATAATTGTC TATGAACCAG TGCGCAACGA ATCAAATGTG
ATTACGGATT ATCGGACGGT GTATTACAAT CAGAAGGCAA TACAAATCAC GGGGCATACG
CATGAGGAAA TGATGACCCT GTGCCTATTT CAGCGGGCAC CTTACGCACG GGCACAGGAA
GAAAGTTTTA GGCAGTTGGT AGAAGCGCAA ATTCCATTTG ATGTTGAGCA CGTCATTCCC
GAAAGAAACC GATGGTTTTC GTTTGAAAAC CGTCAGTTGG ATAATGGTTT TTTTACAACC
ATTCGCGACA TAGACGACCT TAAACGAGCG GAGCAGCAAC TGGAACAACA AAATAAAGTA
CTAGAAGAAA CGATCAGCCG TACCAAAGAA CAGCAACTAC TGCTTAAAAG TGTGCTCGAC
ACCTCGCCAA ACAGCATCAT GCTTGAGCGG GCGATTCGGG ATGAACAGGG TGCGATTATA
GACTTTCAGG TCGTCCTGTT CAACCAGGCA GCGCTACGAC TGGGGTTCTA CTCATCAACG
GAATTAGCAA AAAAACGGAT TAGTGAGCTG AATCCCAACT TCGTTTCATC GGGCCTGATG
GCAGCTTATA GCAACGTTCT GGCAACAGGA CAGCCTTTTC AGACCGAAAT ATTCGCACCT
CAGTTGCATA AACATCTGGC ACTGACGGTT ACCCGAATGG ATCGCGACCA AATCATTGTT
TTGTTCGATG ATGTTACGCA GATCCGGGTT GATGCAAAAA CCTTACGAGA AAAGAACGAA
CTACTGGACG GTGTACTACG TACATCATTA AGTTCGATCA TGGTTTACGA AGCGGTTCAT
GATGTATCAG GGCAACTGGC TGACCTTCGG GTTGTATTGA CCAATGAAGC GTCGTTGCGG
GCTTCTCACC GTAGAAATGA AAACATCATT GGCAAGCTGT TAACATCACT TAACCCCGAA
ACCAGGACTA CCGGCCTTTG GGATCAATAC GTGGCTGTTT ACGAGTCGGG TGAAATTTTT
CAGGGTAAAC ATTATTTCCC CACTTTAGAC AAGTGGTTTG ATGCAACAAT CAGCAAACTT
GGTGATGGAC TGGTAACCAC CTTTAACGAC ATCACCCATG TATACTCTGT AAACCGGCAG
ATAGAAGAGC AGGCACAGCT TTTTGACGGC GTGCTGAAAA ACATGACAAA TGGTCTATCC
GTACTGGAGG CCATACGGGA TTCGGATGGT AATCCAATCG ACTTCCTATT TGTTCGGGTC
AGTGAAGCTG TCTTACGAGA TACACGCCTT ACTAGCGAGC AATTAATCGG GAAGTCTCTA
CTTTCCATTT TTCCCGGCGC TAAGCAAATG CCCCATTGGG ACGCCTTTAT TGATACGCTG
TCGACCGGCG TACCGAAGCA CTTCGAATGG CTTTATACGT TGGCTGGGAC GAATACCTAT
ACAGACAACT GGATCAATCG ACTCGACGAA AACAGGCTCG TTTCTGTATA TCTAATAACG
AATGAACAGA AACAGGCAGA ATCGTTGGCA AAACAACGGG CATCTATCTT ACAAAGTGTT
CTGGATAGTT GCCAAACCTC CATTGTCCTG TTTGAGGCTA TAAGAAACGA AGCCGGACAA
ATTGTCGACT TTCGGTACCT GGTTCAAAAC GAAGCAAATG CCCGTCTGGT AAACCACCCT
TTGGCTGAGA CTCAGTCGAG GACTATGCTT GAAGTACTCC CCTATTTAGT ACCATCCGGT
ATTTTTGAAC GGTATGTTAC CGCCGTAGAA ACCGGCCAGC CTCAACGGTT CGAGCAGTAC
TATAATGATG GTTCTGTAGA AGGCTGGTTC GACATCTCCG TTGTTAAACA GGATGACGGC
ATAGTTGTCG TAGCGCATGA CAATACGCTT CTGCGCCGAA CGCTTAAACA CGCGGAACAA
CTGGTGATCA ATCTACGCCA GTCGAACCAT AATCTGGAAC AGTTCGCCTA CATTGCCAGC
CATGATTTAC AGGAACCCCT ACGCAAGATT CAATCATTCG GAAATCTGCT GATCGACCAA
TACGGAAATT TGCTGCCGGA AGACGGGCGG GTAATGCTCC GGCGAATGCA ATCGGCAGCC
GAGCGAATGA GTCAGCTAAT CCGGGATTTG CTCGCCTACT CCCGTTTAAG CAGTGAACAG
GAGCCTTTTC AGCCGGTTAG CATGCAGCGA ATCTTGGCCG AAATTTTAAG TGACCTTGAA
CTGGTTATTC AGGAGAAAAA GGCCCGTCTA ACCATCCCGA ACCAATCCGC TCACGCCTTG
ATTTACATCA ACGGCAACCG AAGTCAGTTG CGGCAGTTGT TTCAGAACCT GCTGAGCAAC
GCGCTCAAAT TCGTATCCCC AGACAGCACT CCGGAAGTGA CTTTTCAGGT ACGGACCGTT
TCTTTCGAAG AAGTTCCTGC ACTGGTTCCA AACCGGGAAA AGTCGTCGTG GATTGCCGTC
GATATTACCG ATAACGGTAT TGGCTTCGAT GAAAAATACC AGGAGCAAAT CTTTCATCTA
TTCGAACGTC TGCACGGCCG GAATGACTAC TCAGGTACGG GTATCGGGCT GGCGATCTGC
CGAAAAGTGG CCGAAAATCA TGGCGGTACC ATTGTCGCGA AAAGCCAAAA GGGAGCTGGC
TCTACGTTTA CGGTATTTTT GCCAACGGTC GATTAA
 
Protein sequence
MTTPTSVSSS ATPLNLFASL VDHSPNGIIV YEPVRNESNV ITDYRTVYYN QKAIQITGHT 
HEEMMTLCLF QRAPYARAQE ESFRQLVEAQ IPFDVEHVIP ERNRWFSFEN RQLDNGFFTT
IRDIDDLKRA EQQLEQQNKV LEETISRTKE QQLLLKSVLD TSPNSIMLER AIRDEQGAII
DFQVVLFNQA ALRLGFYSST ELAKKRISEL NPNFVSSGLM AAYSNVLATG QPFQTEIFAP
QLHKHLALTV TRMDRDQIIV LFDDVTQIRV DAKTLREKNE LLDGVLRTSL SSIMVYEAVH
DVSGQLADLR VVLTNEASLR ASHRRNENII GKLLTSLNPE TRTTGLWDQY VAVYESGEIF
QGKHYFPTLD KWFDATISKL GDGLVTTFND ITHVYSVNRQ IEEQAQLFDG VLKNMTNGLS
VLEAIRDSDG NPIDFLFVRV SEAVLRDTRL TSEQLIGKSL LSIFPGAKQM PHWDAFIDTL
STGVPKHFEW LYTLAGTNTY TDNWINRLDE NRLVSVYLIT NEQKQAESLA KQRASILQSV
LDSCQTSIVL FEAIRNEAGQ IVDFRYLVQN EANARLVNHP LAETQSRTML EVLPYLVPSG
IFERYVTAVE TGQPQRFEQY YNDGSVEGWF DISVVKQDDG IVVVAHDNTL LRRTLKHAEQ
LVINLRQSNH NLEQFAYIAS HDLQEPLRKI QSFGNLLIDQ YGNLLPEDGR VMLRRMQSAA
ERMSQLIRDL LAYSRLSSEQ EPFQPVSMQR ILAEILSDLE LVIQEKKARL TIPNQSAHAL
IYINGNRSQL RQLFQNLLSN ALKFVSPDST PEVTFQVRTV SFEEVPALVP NREKSSWIAV
DITDNGIGFD EKYQEQIFHL FERLHGRNDY SGTGIGLAIC RKVAENHGGT IVAKSQKGAG
STFTVFLPTV D