Gene Slin_0726 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0726 
Symbol 
ID8724456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp881021 
End bp883372 
Gene Length2352 bp 
Protein Length783 aa 
Translation table11 
GC content50% 
IMG OID 
Productcapsular exopolysaccharide family 
Protein accessionYP_003385588 
Protein GI284035658 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACCA ACTCATCGAA CTACAGCTAC GTGCCATACC AGCTCATGGA CACGGGCAGC 
ACCCAAATCA GAGCAACGCT GTTGCGGTAT GTCCGTTACT GGTACTGGTT TGTGCTATCG
GTAGGGACAT TACTTATCGT CGCTTTTTTT TACCTGCTCT ACCAGCAGCC TATCTACAAA
AGCACGGCAA GTTTACTGGT TAAGGACGAA AAAAAAGGAC TGGACTCCGA GAGCATGCTC
AAAGAGCTGG AAATTTTTGC CCCGAAAAAA GTAGTCGAGA ATGAAATTGA AGTGCTGAAG
TCCTACACCC TGATGGCTCG GGTGGTTCAA CAACTCCATC TGGACGTAGT CTATTATCGC
GAAACGCCAT TTGGTAAACG GGAGCTATTT AACCAGTCGC CGGTGCGTTT GATCATTGAG
CAAGCCAACC CGTCACTCTA CACGGCAGAC CCGCTACACC TGGCCTTTAT CGACAAAAAT
ACCGTCAGCC TAAACGGTCA GCGATATCCC CTCAACCAGA GCGTAAAGAC GCCTTACGGC
CGGTTACGGG TGTTTCCCCG CCAGCCGGTT TCATCATCGA CCGAGCCCGT TTTCATTCAG
GTTTTCGAGG AGGAAAAAAT AGTCAATGGC TATTTGAAAG TACTGAAGGC CGAGCCTACC
AGCAAAGCCT CTACGGTAAT AGCCCTTTCA CTGGAAACAG CCGTTCAGGA TAAAGGAGAA
GCTATTCTGA ATCGCCTGAT CGATGTTTAT AACGAAGCCG CCGTACTGGA TAAAAACCGC
GTTGCGTCGA ACACCCTGAA TTTTATCGAA GAACGGCTGC AACTGGTAGC GGGCGAGCTG
GAATCGGTCG AAAAAGGCGT TGAACGATAC AAATCGGCGC AGGGAATTAC CGACCTTACC
AGCCAGGCGC AGGGCTTTCT GGAAACCGTT CAGCGCAATG ATGCCGAGAT GAGTCAGGTT
TCTATTCAGT TGGGAGCCCT CCGTGAAATT GAGGAGTATA TTCACCAGCA ACCCGGTCAT
CGGAATGGTA CACCTGCAAC CCTTGGCTTA AGTGACCCCA CCCTGATCAA CCTCATTCAA
ACCGCTACCA AGTTAGAAGC ACAACGGAAT GAACTGGCAC AGACAGTTCC GGATAAAAAT
CCACTCCTGC GCACTGTCGA TGCCCAAATC AGAGCCATTA AAGCCGACAT CAATGAGAAT
ATAGGCACCA TGCGGGCTAT GCTCACCACA GCCCAGCGCC AGTTTACCCG GACTAACCAG
ACGATAGAAG GGACAATACG AACAATACCG GCCAAAGAGC GGGCGCTGCT GAACATTACC
CGCCAGCAGG CCATCAAAAA TGATTTGTAT ACCTATTTGC TGCGCAAACG GGAAGAAACG
GCGGTATCCT TTGCTTCGAC TATTTCCGAC TCCCGGGTAA TCGACGTAGC CCGTAGTGAA
GCAAAACCAA CGAAACCGAA CAAGCCGCTC ACTTACCTGC TGTTTATGCT TGTTGGTTTG
ATGATCCCTA TTGGCATCAT GAGTAGTCGT GATGTCATTA ACAACCGGGT AATCCGGCGA
GCCGATGTAG AAGCCCAGAC CCAAACGCCC ATTTTAGGCG AAATTGTACG AAAACGCTCA
CCCGACTCAC TTGTCGTATC CTCGCGGGTA AACTCGGTCA TTGCCGAACA GATCAGGGCC
CTGCGTACCA ACCTGAGCTT CCTGCGCGAT CACCGAGCGG GTAGTCAGGT GTTACTTTTC
ACGTCCAGCA TCAACGGCGA AGGGAAATCG TTTCTCTCCC TGAACCTCGG AGCTAGTCTG
GCTCTGGTGG GGTCACGAAC CGTAATTCTG GAGATGGACT TGCGAAAACC TCAACTTCGC
AACTCACTCG ACATCGACAA TGGGCTGGGA CTGAGCAACT ATTTGATTGG CGAAACAACC
GTAGAGGCTA TTATCCAACC AATTATAGGC AATGACAATT ATTACATCGT TCGAAGCGGC
CCACTGCCCC CCAATCCGTC TGAGTTACTG AGTGGAGTTC GGCTGGAGAA ACTGATTCGT
GAATTGCGGG AACGCTTTAA CTATGTGATC ATCGATGCAC CACCCGTTGG TCTGGTTACC
GATGCCCAGC TCATTGCCCC GTATGCCGAT GCTACCTTAT ACATCGTTCG GCACGATGTT
ACGCCCCGGA ATTATTTGAA AATGATTGAA ATGCTTCACC GCGAAAAGCG CTTCAACAAA
CTCAACATTG TACTCAATGA CGTTGGTGAC AGTGAACCGA ATTACTACAG CTATGGCCAG
AAAGGAAATG CCTACGGCTA CACAAACACC AAGAAAAAAA CGCTGCTAGA CCGCTTACTT
TCTACTACTT AA
 
Protein sequence
MATNSSNYSY VPYQLMDTGS TQIRATLLRY VRYWYWFVLS VGTLLIVAFF YLLYQQPIYK 
STASLLVKDE KKGLDSESML KELEIFAPKK VVENEIEVLK SYTLMARVVQ QLHLDVVYYR
ETPFGKRELF NQSPVRLIIE QANPSLYTAD PLHLAFIDKN TVSLNGQRYP LNQSVKTPYG
RLRVFPRQPV SSSTEPVFIQ VFEEEKIVNG YLKVLKAEPT SKASTVIALS LETAVQDKGE
AILNRLIDVY NEAAVLDKNR VASNTLNFIE ERLQLVAGEL ESVEKGVERY KSAQGITDLT
SQAQGFLETV QRNDAEMSQV SIQLGALREI EEYIHQQPGH RNGTPATLGL SDPTLINLIQ
TATKLEAQRN ELAQTVPDKN PLLRTVDAQI RAIKADINEN IGTMRAMLTT AQRQFTRTNQ
TIEGTIRTIP AKERALLNIT RQQAIKNDLY TYLLRKREET AVSFASTISD SRVIDVARSE
AKPTKPNKPL TYLLFMLVGL MIPIGIMSSR DVINNRVIRR ADVEAQTQTP ILGEIVRKRS
PDSLVVSSRV NSVIAEQIRA LRTNLSFLRD HRAGSQVLLF TSSINGEGKS FLSLNLGASL
ALVGSRTVIL EMDLRKPQLR NSLDIDNGLG LSNYLIGETT VEAIIQPIIG NDNYYIVRSG
PLPPNPSELL SGVRLEKLIR ELRERFNYVI IDAPPVGLVT DAQLIAPYAD ATLYIVRHDV
TPRNYLKMIE MLHREKRFNK LNIVLNDVGD SEPNYYSYGQ KGNAYGYTNT KKKTLLDRLL
STT