| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0672 |
|---|
| Symbol | |
|---|
| ID | 8724402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 838651 |
|---|
| End bp | 839877 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003385534 |
|---|
| Protein GI | 284035604 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.637473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.194425 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATAGCC ATTTAGATTT AACAAAACGC TTAACACTAT CCGCAATGCA ACCGGCCAAA
AAGGGGCAAA ATCAACCACC ACCGTACCGA AACTGTAAAC TGTATCACTA CGATTATGAC
ACCTCAAAAA CTTGGTTACT TGAGTTCTAC CAATGGAACA TAGTTACCCA ACGAAAGGAA
AGACGATTCT TTTCTAAGTT CAACCACATC AAGGATGCTA AGAAGCGATT AGCCGAAGCC
CAGAAGTGGG AACGCTTCAT CAATCAACAA TTAGAGCAGG GTTCTGTCTA TAATCCTGCC
ATCGGTAAGA CACCAGCACC TAAACCCGTT GCTAGTCCGC TTCTGCTGAC AGATTTAGAA
AGTTATCTAG CTGACAAAAA AAGTACGTTA GGTTCTGAGG AGTCCTATAA GGTTTATAGG
AATTTCAGCG ATAAGCTAAA AACCTTTATC GCTTCCAATA AACTTGATCA GTTATCGACT
AAGGATGTCA CACCGGAAAT TTGTGAGCAG TACCGGGATT ACATTCTTAA GCTGCATGAA
CATCCAACCA CAAGAAGAAA AGAAATTACC CAGGCTAAAA CCTTCTTTCA GTACTACGCT
AAGAAAGGAC GGAGACGGTA TGATGTAAGC CCGGCTTCTG ATCTTGAGCT CGTGCCTAAA
CAGGAGTCTC AAATGCACGA ACCCTATACT GATAAGCAGG TATCGGATAT TATTGATTTG
ATCGAGCAAA AGCAGGATTT TCAATTACTG CTGTTTATCT ACTTTGTGCA TTACTGCTTT
GCTCGTCCCG GTAAAGAAGT ACGATTAATG CAGGTAAAAG ACCTTCGTGA ACGTTCGGTT
ATGATTCGCC CAGGCCGTTC TAAAACCAGC ATTACCAAAG CACCTACGCT TCCTAAACCA
TTGGCCGAAC TCATTGACTT CTTAGACATC CGTTCGTGTA ATCCTGAGTT CTACGTATTT
GGCAATGAAG GAAAACCCGG CTCTGTCCCG GTGGGTAAGA ATCATTTCTA CTATCGTCAT
TCCAAGATAC TTGCAGAACT AGGAATAGTC GGTAAGTACA CCGTTTACGG CTGGAAACAT
ACGGGAAACA TCAAAGCTAT TCGTTTAGGC ATAAACCCGA AAAAACTGCA ATTACAGAAC
GGGTTTACTG AGTATCGAAC GATGGAGATT TATACCAGAC GACTAGCCGC TTTTGCTGAC
GATGAGATTT ATGATAAGTT CATTTAA
|
|---|
| Protein sequence | MYSHLDLTKR LTLSAMQPAK KGQNQPPPYR NCKLYHYDYD TSKTWLLEFY QWNIVTQRKE
RRFFSKFNHI KDAKKRLAEA QKWERFINQQ LEQGSVYNPA IGKTPAPKPV ASPLLLTDLE
SYLADKKSTL GSEESYKVYR NFSDKLKTFI ASNKLDQLST KDVTPEICEQ YRDYILKLHE
HPTTRRKEIT QAKTFFQYYA KKGRRRYDVS PASDLELVPK QESQMHEPYT DKQVSDIIDL
IEQKQDFQLL LFIYFVHYCF ARPGKEVRLM QVKDLRERSV MIRPGRSKTS ITKAPTLPKP
LAELIDFLDI RSCNPEFYVF GNEGKPGSVP VGKNHFYYRH SKILAELGIV GKYTVYGWKH
TGNIKAIRLG INPKKLQLQN GFTEYRTMEI YTRRLAAFAD DEIYDKFI
|
|---|
| |