| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0628 |
|---|
| Symbol | |
|---|
| ID | 8724356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 788249 |
|---|
| End bp | 789634 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | |
|---|
| Product | RNA-directed DNA polymerase (Reverse transcriptase) |
|---|
| Protein accession | YP_003385490 |
|---|
| Protein GI | 284035560 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.556135 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0521635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAA GTATGTTTGA TTTATCTACT TACTTCGAGG AGGAATTATT ATTAAGACTA
TACCGTGAAA AAATATCAAA AAAGAGGACA AAAGGAATTG ATCGTGTATC ACAAGAAGTA
TTCAACACAA GAAAGAATGA AGAGATATCT TTGATTCTAT CAAAAGTTTT AAATGGTTCT
TATAAGTTCT CACCATTTCT AGAAGAGTTA AGAATAAGAT CGAGAGATCG GCTTCCTCGG
TTAATTTCAA TTCCAACAAT TAGAGATAGA CTTGTATTAG CTACTCTTAA AATAGCTTTA
CATGAATACT TTACAGAATC TGTCCGTAAA CAAGTTGCCT CAATCTATAT AAATGAAGTA
AACAAAACTT TATCTCTCAA TACCTTTACC TACTACATAA AAATTGACAT TAAAAGCTTT
TTTGATAGCT TAAGTCATAC TAGATTATTC ACTATACTTA ATTCTATTTT GCCCGAAACA
TTATATTTAT TAGTTAAAAA GGCTATATTA AACCCTACGG TTCCAAAAGA CTGCCTATCA
GTTGAAGTTG AAAAATACAT CCCCAAAGCT GGTGTTCCTC AAGGGATTTC AATTTCAAAT
ATACTAGCTG AGATTTATTT AAGAGATTTT GATATTTTAT ATGGAATGAG AGAAGATATT
AAATATTTTA GGTATGTAGA TGACATACTA ATATTATCTA ATAATTTAGA TTTATACAGC
GAAGTATTAC ACAAACTAGA GTTACTTTTT TTAGAACCCA ATGGCAATAA ATGTTCACAA
GGGAATATTT GTGATGGATT TCATTATTTA GGCTTTCATA TTAATAATGA ATTTATATCC
ATTCAAGAGA AAAGAGTACA AAAATTCTTA CAAAGAATTG CAGGAAAAAT TACTTGGTTT
CAAAAAGCAA TTAACAACAA ACCTATTAGG CCTAACTGGC TTGCAAACGA AGATACCTTT
GTTGCATCTT TTATTGATGA TCTTAATGAA AAGATTACTG GGGCTATAAA TGGCAGTAGG
GGATATGGCT GGTTATTCCA CTATAAAGAG ATGAATAACA TTAATCAATT ATATAGAATA
GAAAACGTCA TATCATCATT TTTTATTCGA TTGTCCTATT TTGAAAACAA GAAACCTAAA
GAACTTAAAA GTATAGTCAG AGCTTATTAT GAAGTAAAAT ACAAAGGCTT AAAAAGTAAC
TACATTTCTA ATTATAATAA TATAGACAGT GTGGACAAAA AGCGGCTTTG GTTAATTAAT
AGAGGGATCA TAAGCGAAAA AGACGATCAT GTGGATGATT TTATAAACGA TGTATTTGAA
GCCAATAGAG ATCGGAATCT AAAAAGTTTA GAAAAAGATG AAAAAGAGCT AATAGGAAAT
TATTAA
|
|---|
| Protein sequence | MDASMFDLST YFEEELLLRL YREKISKKRT KGIDRVSQEV FNTRKNEEIS LILSKVLNGS
YKFSPFLEEL RIRSRDRLPR LISIPTIRDR LVLATLKIAL HEYFTESVRK QVASIYINEV
NKTLSLNTFT YYIKIDIKSF FDSLSHTRLF TILNSILPET LYLLVKKAIL NPTVPKDCLS
VEVEKYIPKA GVPQGISISN ILAEIYLRDF DILYGMREDI KYFRYVDDIL ILSNNLDLYS
EVLHKLELLF LEPNGNKCSQ GNICDGFHYL GFHINNEFIS IQEKRVQKFL QRIAGKITWF
QKAINNKPIR PNWLANEDTF VASFIDDLNE KITGAINGSR GYGWLFHYKE MNNINQLYRI
ENVISSFFIR LSYFENKKPK ELKSIVRAYY EVKYKGLKSN YISNYNNIDS VDKKRLWLIN
RGIISEKDDH VDDFINDVFE ANRDRNLKSL EKDEKELIGN Y
|
|---|
| |