| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0456 |
|---|
| Symbol | |
|---|
| ID | 8724184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 568440 |
|---|
| End bp | 569828 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | glycosyl hydrolase family 88 |
|---|
| Protein accession | YP_003385319 |
|---|
| Protein GI | 284035389 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAATT ACCCATCTAA AACTGGTCTC TCAAACCGCA CACTGGGTTT GGTACTCGCC
GGTCTGCTCA CCGGAAGCAC CCTCTATGCC CAACCCGGTG CGCCAAAAGC CAACGACTCC
ACTACCCCCC TGCACCTGTT ACAGCCCGAT TACCCGGTGC CTTATGGTCA GCCTAAACCG
GAGGATGTCA CAAAGGTTAT TAACCGAATT TATACATATC TGGATGCCAA TACGCCAACG
CAGCTGATCG ACAAAGAGAC AAAAAAGGAC ATTATTCCGG GCGGCTCCTT CAATCCCAAT
GCCATTTTTA AACCCGGCGA CTTCCGGCTG ATCAGTTATG AGTGGGGCGT TACCTATGCC
GGTATGCTGC TGGCCAGTGA AGCCACCGGC GATTCCCGCT ATGCCGACTA TACCAACAAA
CGACTGGAGT TCATTGCCGC ACAGGTGCCT TACTTCCGTG CTCAGGTAAC CACCGACCCT
ACTGCCAACA CGCCCATGCG GGCGGTGCTG GCCCCCCACG CCCTCGACGA TGCCGGGGCG
ATGTGTGCGG CCATGATCAA GGCCAGTCGC GCCGGGGGTG TAAAAGCCAA CCTGCGGCCC
ATGATCGACA ATTACATCAA TTACATTCAG ACCAAAGAAT ACCGTTTGGC CGACGGAACG
CTGGCCCGCA ATCGCCCGCA GCCCAACACG CTTTGGCTCG ATGACCTCTT TATGAGCGTT
CCGGCTCTGG CGCAAATGGG CAAACTCACC GGCGATAAAA AGTACTTCGA TGAAGCCGTA
AAACAGGTCA CGCAGTTCTC GAAACGGATG TTCAACCAGC AAAAAGGATT GTACATGCAC
GGTTGGGTTG AGGGCATGAG CGTGCATCCG GAGTTTCACT GGGCGAGGGC CAATGGCTGG
GGCATCCTGA CTGCGGTAGA ATTGCTGGAT GCCCTACCCG CCAATCACCC CGGCCGACCA
GCCATGCTGG ACTTGCTGAA AGCGCACGCC AAAGGGCTGG CCGCTCAACA ATCGGGGTCG
GGATTCTGGC ACCAGTTGCT TGACCGTCAC GATTCATATC TGGAAACATC GGCAACGGCG
ATTTACGTCT ATGCCTTTGC TCATGCCATC AACCAGGGCT GGCTCGACCC GCTGGCTTAT
GCGCCCGCTA CTCTACTCGG CTGGAATGCT ATGTCAACGA AAGTTACGGA TAAAGGACAG
GTTGAAGGAG TTTGCGTAGG AACGGGTATG GGCTTCGATC CGGCCTTTTA TTACCATCGA
CCCATAAACC CCTATGCGGC TCATGGCTAC GGACCCGCCT TGCTAGCCAG TGCCGAAGTA
CTGAAGCTGC TCAAAAACAA GACGTTTGAG ATAAATGACA GTTCGTTACA GCTAACGCTG
AAAAAATAG
|
|---|
| Protein sequence | MSNYPSKTGL SNRTLGLVLA GLLTGSTLYA QPGAPKANDS TTPLHLLQPD YPVPYGQPKP
EDVTKVINRI YTYLDANTPT QLIDKETKKD IIPGGSFNPN AIFKPGDFRL ISYEWGVTYA
GMLLASEATG DSRYADYTNK RLEFIAAQVP YFRAQVTTDP TANTPMRAVL APHALDDAGA
MCAAMIKASR AGGVKANLRP MIDNYINYIQ TKEYRLADGT LARNRPQPNT LWLDDLFMSV
PALAQMGKLT GDKKYFDEAV KQVTQFSKRM FNQQKGLYMH GWVEGMSVHP EFHWARANGW
GILTAVELLD ALPANHPGRP AMLDLLKAHA KGLAAQQSGS GFWHQLLDRH DSYLETSATA
IYVYAFAHAI NQGWLDPLAY APATLLGWNA MSTKVTDKGQ VEGVCVGTGM GFDPAFYYHR
PINPYAAHGY GPALLASAEV LKLLKNKTFE INDSSLQLTL KK
|
|---|
| |