Gene Slin_0442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0442 
Symbol 
ID8724170 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp551127 
End bp551915 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content51% 
IMG OID 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003385305 
Protein GI284035375 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0522826 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCACAAA AGTCATATTC TGCTTATAGC GCTGAGGAAT TCGTCCTTGA TGACTTATTC 
GTACGATGGG TTAAACACCC GAACGACGAA GAGGTCGCGT CCTATTGGCA GATATGGTTG
TCGAACCATC CTCACCAGGA AGAAACAGTA GAGACAGCAC GGTACCTCAT TCAAACGGCC
CGGCATTCTG ATTTACCAGC TCTGTCGTCT GACGAGATTT CAACAGTATG GGGACGCATA
CGCGAGTCGC TTCAGACTAT GGAAGACGTC AGGCCACTTC AGCCCGATGT TCGGGCAATG
GTTGGGTGGT GGTACTTTAT GCGAACTGTT CTGGCTGTAT TTGGTGTGAT AGCTCTTATT
GGCTGGGCGC TCTGGATGCA GTACGGACCC GAGCAATCGG TATGGAGCGT CAGTACTCAC
GCCTACCAAA CCCGTCAGAT TCGCTTACCG GACAATTCAA CCATGACGTT GTATCCGAAC
AGCACCGCCC GCTACGCACG GCGTTGGTCT GACGAGACAC CAAGAGCGGT ATGGTTAAAG
GGAGAAGCTG ATTTCTCGAT CATCCACCGA AACGACACCT CGTCGGCACG TTTGTTCAGA
GTCCATACTG CTGGCCTGAC CATCGAAGCT GTAGGAACTA TCTTTCGGGT GAGACAACGA
CCAACAGGAA CATCGGTAGC GCTTACTTCG GGGCAGGTAA GTTTACTCGT AAAATCGAAA
GACCCAATAC GGCTTAAACC GGGCGAATCC ATTGAGATTG CCGCAGGTAC AACCAAGACA
TTACCCTAG
 
Protein sequence
MSQKSYSAYS AEEFVLDDLF VRWVKHPNDE EVASYWQIWL SNHPHQEETV ETARYLIQTA 
RHSDLPALSS DEISTVWGRI RESLQTMEDV RPLQPDVRAM VGWWYFMRTV LAVFGVIALI
GWALWMQYGP EQSVWSVSTH AYQTRQIRLP DNSTMTLYPN STARYARRWS DETPRAVWLK
GEADFSIIHR NDTSSARLFR VHTAGLTIEA VGTIFRVRQR PTGTSVALTS GQVSLLVKSK
DPIRLKPGES IEIAAGTTKT LP