Gene Slin_0386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0386 
Symbol 
ID8724114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp487899 
End bp489923 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content52% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003385249 
Protein GI284035319 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.963585 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.451057 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGGC CTTTTGCTGC TAAATCTACT TCATTGTTAC CCGACGAAGA GGTTCTACTT 
TTACGTTCGT ACGATCAATT ACAAACAGCG CTTAGCATTG GCCTGATTGC TACCTGGTTT
TGGGATCTGG GTACAGACAA CGTACTTGGC GACCCTAACC TTTTGCGCAT GTTCGGCATT
CACGAAAGTG CCGAAAGAAC CAGCCTTCCC CTGCGTGTAT TTACCGACTC CATACACCCC
GACGATCGAC CCAGAGTAAT CCAGCTGATC GATCAGGGCG TACAGTCCGG CCGTCCTTAC
GAAGCGGAAT ACCGCATTGT GGTAAATAAC CAAACCCGTT GGGTGCTTGC CAGAGGGCGG
TTAACCTATA CAGACACCCA ACAACCGTTT GCCTTTTCGG GCGTACTGGT CGATGTAACG
GACCGGAAGG AAGTTGAACT GCGCTCGCAA ATTGCCGAAA CAAGTTTCCG GCTATCGGTC
GAATCGGCTC GTATGGGCAC CTGGGACTAT AGTCCGCTTA CGGGGACATT GATCTGGTCT
GACCGGACAA AAGAGCTGTT TGGCCTGCCT CCAACGGCAA CCATCGACTA TAGCGTCTTC
TTGCAGGGGC TTCATGCGGA TGATCGTGCG CGAACAGATC AGATGATTCA GGCGGTGCTT
CAACCCGGCA GCAGTGGTCG CTTTGACTGC GAATACCGAA CGCTGGGCAT TGAGGATAAG
CAGTTACGCT GGGTTCGTGC CAACGGCCAG GCCTTGTTCA ACGAACAGGG TATTGCCAAT
CGGTTTATCG GTACCGTTAT CGATATAACC GCTGATAAAG AAGCGGAATC GCTGCTGCAA
CGACGCGTGG ATGAGCAAAC CCGTATTCTG GAACAACAGG CACTTGAGCT ACGCACAACC
CTGGATGCAT CGCTTAACAG CATCATTGCC ATGACGGCCA TACGGGATGA AACGGGAACT
ATTGTTGACT TTATGATGAA CACGGCTAAC GAAGCCGTTA TCAAGAGCAA CTTCATGACA
CCCGATCAAA TCATCGGCCG AACAATGTTA ACTGTGTTTC CGGGCAATAA AGACAGCGGT
TTTTTCGACC TCTACGCGCG GGTTGTCGAA ACCGGTCAGG CCGAACAGAG CAGCCAATAC
TACCGCGATG AGTTCGGGCT GGAAGGCTGG TTTGAGGTGT CGGCCGTTAA GCAGGGAAGC
AACGGGGTGG TGATTACCTA CAATAACATC ACCGACCGCA AGCAGGCTGA ACTGGCCGCC
CAGCTTCAGG AGCGGGAGTT GAAAGATGCC AACGTTGAGC TACAGCGCTC CAACGAGAAC
CTGCAGCAGT TTGCCCATAT CGCTTCGCAC GATTTACAGG AACCACTCCG GCGAATCCAG
GCATTCAGCG ATATTCTACA GAATCAGTTT GTGGATAGTC TCTCTGATGG CGAACGGGAC
ATGGTTCGTC GTATTCAGAA GTCGGCGCAG CGAATGCAGA TGCTCATTAA AGATTTGCTG
CTTTATTCGC AGGTGAGTAC CCAACGGGAT TCGTTCACGA TTGTCTCGCT GGATATCGTC
CTCGAAGATG TGGTAACGGA TCTGGAAATG ACCATCGCCG AGAAAAACGC AACGGTCGAT
GTATCTCCTC TCCCATCGGT GTACGGAAGC GCGTCGCGGC TGCGTCAGCT TTTCCAGAAC
CTGATTACCA ACGCGCTGAA ATTCTGTCAG ACAGGTGTTC CCCCGCTCAT TGAGATACGG
TACCGTACCG CCCAACCAAG CGAACTCCCC CCGGTTCTCC TGAACGATTC CAATCAGGCC
TTCTGGTTAA TCACCGTTAC CGACAATGGT ATTGGATTTG ACGAACGCTA CAAAGACCGG
ATTTTCACCC CATTTCAACG ACTGCACAAG ACCTCCTATA GCGGAACCGG CATTGGCCTG
GCCATTTCGC AGCGCGTGAC CGAAAGTCAC GGCGGGGCAA TCGACGTAAC CAGTCAGGAC
GGAAAAGGGT CTACGTTTAA GGTTTTCTTG CCCGTTGTCA ATTAA
 
Protein sequence
MNRPFAAKST SLLPDEEVLL LRSYDQLQTA LSIGLIATWF WDLGTDNVLG DPNLLRMFGI 
HESAERTSLP LRVFTDSIHP DDRPRVIQLI DQGVQSGRPY EAEYRIVVNN QTRWVLARGR
LTYTDTQQPF AFSGVLVDVT DRKEVELRSQ IAETSFRLSV ESARMGTWDY SPLTGTLIWS
DRTKELFGLP PTATIDYSVF LQGLHADDRA RTDQMIQAVL QPGSSGRFDC EYRTLGIEDK
QLRWVRANGQ ALFNEQGIAN RFIGTVIDIT ADKEAESLLQ RRVDEQTRIL EQQALELRTT
LDASLNSIIA MTAIRDETGT IVDFMMNTAN EAVIKSNFMT PDQIIGRTML TVFPGNKDSG
FFDLYARVVE TGQAEQSSQY YRDEFGLEGW FEVSAVKQGS NGVVITYNNI TDRKQAELAA
QLQERELKDA NVELQRSNEN LQQFAHIASH DLQEPLRRIQ AFSDILQNQF VDSLSDGERD
MVRRIQKSAQ RMQMLIKDLL LYSQVSTQRD SFTIVSLDIV LEDVVTDLEM TIAEKNATVD
VSPLPSVYGS ASRLRQLFQN LITNALKFCQ TGVPPLIEIR YRTAQPSELP PVLLNDSNQA
FWLITVTDNG IGFDERYKDR IFTPFQRLHK TSYSGTGIGL AISQRVTESH GGAIDVTSQD
GKGSTFKVFL PVVN